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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
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Retina
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RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1904.6 nTPM
GTEx:1904.6 nTPM
FANTOM5:1277.8 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA045118
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1904.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1904.6
Samples: 105

Max nTPM: 5301.4
Min nTPM: 190.5
Std nTPM: 1105.6
Median nTPM:
352_1 62 years, male 5301.4
354_1 81 years, female 4740.4
172_1 72 years, female 4581.0
350_1 84 years, female 4193.5
349_1 83 years, male 4100.0
386_1 76 years, male 3803.8
163_1 78 years, male 3745.3
243_1 75 years, male 3524.9
218_1 71 years, female 3448.9
319_1 81 years, male 3442.0
394_1 75 years, female 3346.2
356_1 87 years, female 3313.7
379_1 60 years, male 3276.6
425_1 59 years, female 3273.7
321_1 62 years, female 3239.9
447_1 81 years, male 3209.7
355_1 70 years, female 3194.5
6_1 73 years, female 3189.8
177_1 74 years, male 3091.4
376_1 75 years, female 2930.0
353_1 82 years, female 2874.8
377_1 82 years, female 2860.4
335_1 73 years, female 2799.5
480_1 63 years, male 2728.6
292_1 71 years, male 2666.1
317_1 60 years, male 2608.5
404_1 82 years, female 2525.6
351_1 91 years, male 2503.1
389_1 86 years, female 2480.3
503_1 68 years, male 2409.3
406_1 79 years, male 2389.4
286_1 68 years, female 2369.3
318_1 68 years, male 2359.4
316_1 62 years, male 2291.4
517_1 88 years, male 2270.9
99_1 64 years, male 2171.2
320_1 89 years, female 2154.1
347_1 72 years, male 2153.5
375_1 74 years, female 2142.7
229_1 69 years, female 2131.5
115_1 83 years, male 2070.1
506_1 65 years, male 2036.5
526_1 61 years, male 2033.2
293_1 68 years, female 2016.5
291_1 76 years, male 2002.9
322_1 76 years, male 1953.9
251_1 78 years, male 1951.1
173_1 67 years, male 1950.4
384_1 83 years, male 1944.5
189_1 76 years, male 1937.3
452_1 88 years, female 1930.6
468_1 89 years, male 1884.0
348_1 84 years, male 1858.4
9_1 66 years, female 1834.3
246_1 77 years, male 1819.2
265_1 87 years, male 1784.8
295_1 61 years, female 1762.8
324_1 76 years, male 1761.1
237_1 82 years, male 1615.5
264_1 73 years, female 1615.1
2_1 77 years, female 1611.4
405_1 91 years, male 1568.8
396_1 62 years, male 1563.6
266_1 85 years, male 1510.3
217_1 76 years, male 1427.3
254_1 77 years, female 1418.5
145_1 84 years, male 1376.0
126_1 63 years, male 1332.2
518_1 75 years, female 1266.7
35_1 74 years, female 1220.4
120_1 70 years, female 1215.5
117_1 61 years, male 1213.9
499_1 55 years, female 1181.8
311_1 78 years, male 1173.6
4_1 88 years, female 1145.8
137_1 83 years, male 1118.7
288_1 66 years, female 1117.7
17_1 71 years, male 1072.8
18_1 88 years, male 1060.3
142_1 61 years, female 909.1
307_1 66 years, female 886.2
81_1 67 years, male 873.1
109_1 81 years, female 871.4
32_1 67 years, male 850.5
315_1 62 years, female 841.3
313_1 79 years, female 824.7
42_1 85 years, male 791.9
153_1 70 years, female 776.3
314_1 67 years, male 707.7
415_1 77 years, female 707.4
119_1 70 years, female 702.1
162_1 79 years, female 668.7
308_1 70 years, female 654.5
43_1 64 years, female 629.9
139_1 64 years, female 590.0
414_1 84 years, female 526.3
466_1 57 years, female 524.6
495_1 57 years, female 413.6
41_1 94 years, female 412.8
89_1 63 years, male 412.0
149_1 88 years, male 341.4
490_1 67 years, female 239.3
413_1 59 years, female 238.0
501_1 88 years, male 200.8
491_1 89 years, female 190.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1277.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 1277.8
FF:10030-101E3 24-65 years, mixed 1277.8

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