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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA045118
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1904.6
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 1904.6
Samples: 105
Max nTPM: 5301.4
Min nTPM: 190.5
Std nTPM: 1105.6
Median nTPM:
352_1
62 years, male
5301.4
354_1
81 years, female
4740.4
172_1
72 years, female
4581.0
350_1
84 years, female
4193.5
349_1
83 years, male
4100.0
386_1
76 years, male
3803.8
163_1
78 years, male
3745.3
243_1
75 years, male
3524.9
218_1
71 years, female
3448.9
319_1
81 years, male
3442.0
394_1
75 years, female
3346.2
356_1
87 years, female
3313.7
379_1
60 years, male
3276.6
425_1
59 years, female
3273.7
321_1
62 years, female
3239.9
447_1
81 years, male
3209.7
355_1
70 years, female
3194.5
6_1
73 years, female
3189.8
177_1
74 years, male
3091.4
376_1
75 years, female
2930.0
353_1
82 years, female
2874.8
377_1
82 years, female
2860.4
335_1
73 years, female
2799.5
480_1
63 years, male
2728.6
292_1
71 years, male
2666.1
317_1
60 years, male
2608.5
404_1
82 years, female
2525.6
351_1
91 years, male
2503.1
389_1
86 years, female
2480.3
503_1
68 years, male
2409.3
406_1
79 years, male
2389.4
286_1
68 years, female
2369.3
318_1
68 years, male
2359.4
316_1
62 years, male
2291.4
517_1
88 years, male
2270.9
99_1
64 years, male
2171.2
320_1
89 years, female
2154.1
347_1
72 years, male
2153.5
375_1
74 years, female
2142.7
229_1
69 years, female
2131.5
115_1
83 years, male
2070.1
506_1
65 years, male
2036.5
526_1
61 years, male
2033.2
293_1
68 years, female
2016.5
291_1
76 years, male
2002.9
322_1
76 years, male
1953.9
251_1
78 years, male
1951.1
173_1
67 years, male
1950.4
384_1
83 years, male
1944.5
189_1
76 years, male
1937.3
452_1
88 years, female
1930.6
468_1
89 years, male
1884.0
348_1
84 years, male
1858.4
9_1
66 years, female
1834.3
246_1
77 years, male
1819.2
265_1
87 years, male
1784.8
295_1
61 years, female
1762.8
324_1
76 years, male
1761.1
237_1
82 years, male
1615.5
264_1
73 years, female
1615.1
2_1
77 years, female
1611.4
405_1
91 years, male
1568.8
396_1
62 years, male
1563.6
266_1
85 years, male
1510.3
217_1
76 years, male
1427.3
254_1
77 years, female
1418.5
145_1
84 years, male
1376.0
126_1
63 years, male
1332.2
518_1
75 years, female
1266.7
35_1
74 years, female
1220.4
120_1
70 years, female
1215.5
117_1
61 years, male
1213.9
499_1
55 years, female
1181.8
311_1
78 years, male
1173.6
4_1
88 years, female
1145.8
137_1
83 years, male
1118.7
288_1
66 years, female
1117.7
17_1
71 years, male
1072.8
18_1
88 years, male
1060.3
142_1
61 years, female
909.1
307_1
66 years, female
886.2
81_1
67 years, male
873.1
109_1
81 years, female
871.4
32_1
67 years, male
850.5
315_1
62 years, female
841.3
313_1
79 years, female
824.7
42_1
85 years, male
791.9
153_1
70 years, female
776.3
314_1
67 years, male
707.7
415_1
77 years, female
707.4
119_1
70 years, female
702.1
162_1
79 years, female
668.7
308_1
70 years, female
654.5
43_1
64 years, female
629.9
139_1
64 years, female
590.0
414_1
84 years, female
526.3
466_1
57 years, female
524.6
495_1
57 years, female
413.6
41_1
94 years, female
412.8
89_1
63 years, male
412.0
149_1
88 years, male
341.4
490_1
67 years, female
239.3
413_1
59 years, female
238.0
501_1
88 years, male
200.8
491_1
89 years, female
190.5
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.