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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
18.4
nTPM
HPA Brain:
17.4
nTPM
GTEx:
18.4
nTPM
FANTOM5:
20.1
Scaled Tags Per Million
Pig:
22.1
nTPM
Mouse:
24.8
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 12.6
2666
Male, age 74, left hemisphere
16.8
1870
Female, age 42, unknown
14.9
2828
Female, age 72, unknown
14.7
2019
Male, age 18, unknown
13.8
2411
Female, age 72, unknown
13.8
1833
Male, age 53, unknown
13.3
1830
Male, age 51, unknown
12.8
2586
Male, age 75, left hemisphere
9.7
1827
Male, age 72, unknown
8.7
2219
Male, age 76, both hemispheres
7.0
Dorsal raphe nucleus nTPM: 15.0
1828
Male, age 53, unknown
16.1
2750
Male, age 76, both hemispheres
15.5
2298
Female, age 72, unknown
15.3
2047
Male, age 72, unknown
14.6
2016
Female, age 72, unknown
13.7
Inferior colliculus nTPM: 13.2
1890
Male, age 53, unknown
15.8
2097
Female, age 72, unknown
13.5
1848
Female, age 42, unknown
12.7
2849
Male, age 72, unknown
10.8
Median raphe nucleus nTPM: 13.2
2220
Male, age 76, midline
13.2
Periaquaductal grey, anterior nTPM: 16.6
2502
Female, age 75, unknown
19.6
1947
Male, age 18, unknown
18.1
1795
Male, age 51, unknown
12.1
Periaquaductal grey, dorsal nTPM: 11.3
1831
Male, age 72, unknown
14.4
2464
Female, age 72, unknown
12.0
2850
Male, age 76, both hemispheres
9.6
1840
Male, age 53, unknown
9.2
Periaquaductal grey, lateral nTPM: 11.8
2053
Male, age 18, unknown
14.6
2140
Male, age 76, both hemispheres
10.4
2272
Male, age 74, both hemispheres
10.4
Pretectal area nTPM: 11.2
1817
Female, age 42, unknown
15.6
2667
Female, age 75, unknown
13.1
2224
Female, age 72, unknown
11.6
2825
Male, age 18, unknown
11.5
2007
Male, age 72, unknown
11.4
1815
Male, age 53, unknown
11.3
1944
Female, age 72, unknown
10.9
1816
Male, age 51, unknown
10.8
2316
Male, age 76, right hemisphere
10.6
2273
Male, age 74, both hemispheres
9.0
2407
Male, age 75, both hemispheres
7.5
Red nucleus nTPM: 17.4
1954
Female, age 42, unknown
22.1
1821
Female, age 72, unknown
22.0
1904
Male, age 53, unknown
20.1
2769
Male, age 72, unknown
19.6
2227
Male, age 72, unknown
18.4
1865
Male, age 51, unknown
18.2
2823
Male, age 76, right hemisphere
18.1
2588
Male, age 74, left hemisphere
16.6
2503
Female, age 72, unknown
15.8
2725
Female, age 75, unknown
13.5
2584
Male, age 75, left hemisphere
12.9
2785
Male, age 18, unknown
11.0
Substantia nigra nTPM: 12.5
2665
Male, age 74, both hemispheres
22.8
1851
Male, age 51, unknown
14.1
1889
Female, age 72, unknown
13.5
1916
Female, age 42, unknown
13.3
2241
Male, age 72, unknown
11.8
2590
Female, age 75, unknown
11.1
2699
Male, age 18, unknown
11.0
2583
Male, age 75, right hemisphere
10.2
2409
Female, age 72, unknown
9.0
1941
Male, age 53, unknown
8.2
Superior colliculus nTPM: 12.0
2587
Male, age 74, left hemisphere
14.6
1895
Male, age 76, right hemisphere
13.1
2087
Female, age 72, unknown
12.7
1995
Male, age 72, unknown
12.6
2261
Male, age 18, unknown
12.3
1796
Male, age 53, unknown
12.2
1839
Male, age 51, unknown
12.0
1913
Female, age 42, unknown
11.6
2668
Female, age 75, unknown
11.4
2664
Male, age 75, both hemispheres
7.8
Ventral tegmental area nTPM: 14.6
2223
Female, age 72, unknown
15.7
1942
Male, age 51, unknown
15.2
2218
Male, age 76, both hemispheres
14.6
2021
Male, age 53, unknown
14.4
2410
Female, age 72, unknown
14.1
1915
Female, age 42, unknown
13.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 18.4
Samples: 139
Max nTPM: 76.5
Min nTPM: 4.3
Std nTPM: 10.1
Median nTPM: 16.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
76.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
66.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
54.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
48.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
45.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
35.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
33.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
32.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
32.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
31.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
29.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
29.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
28.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
28.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
27.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
27.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
26.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
26.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
26.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
25.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
25.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
25.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
25.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
24.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
24.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
23.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
23.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
23.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
23.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
23.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
22.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
22.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
22.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
22.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
21.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
21.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
21.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
20.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
20.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
20.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
20.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
19.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
19.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
19.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
19.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
19.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
18.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
18.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
18.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
18.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
18.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
18.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
18.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
18.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
17.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
17.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
17.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
17.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
17.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
17.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
17.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
17.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
17.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
16.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
16.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
16.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
16.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
16.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
16.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
16.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
16.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
15.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
15.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
15.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
15.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
15.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
15.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
15.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
15.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
15.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
15.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
14.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
14.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
14.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
14.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
14.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
14.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
14.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
14.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
14.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
14.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
14.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
14.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
14.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
14.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
13.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
13.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
13.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
13.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
13.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
13.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
12.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
12.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
12.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
12.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
12.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
12.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
12.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
12.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
11.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
11.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
11.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
11.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
11.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
11.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
11.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
11.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
11.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
10.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
10.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
10.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
10.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
10.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
10.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
9.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
9.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
9.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
9.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
9.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
8.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
8.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
8.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
8.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
7.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
6.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
6.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
5.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
4.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
4.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 24.8
Samples: 4
Max nTPM: 26.0
Min nTPM: 23.1
Sample A
Male
25.7
Sample B
Male
23.1
Sample C
Female
24.4
Sample D
Female
26.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.