We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.4
nTPM
Monaco:
50.6
nTPM
Schmiedel:
17.0
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.4
HPA sample
nTPM
gdT-cell nTPM: 11.1
Samples: 6
Max nTPM: 15.2
Min nTPM: 2.8
P10809_1007
11.4
P10809_1022
14.4
P10809_1041
2.8
P10809_1060
8.4
P10809_1077
14.4
P10809_1098
15.2
MAIT T-cell nTPM: 12.6
Samples: 6
Max nTPM: 16.4
Min nTPM: 8.9
P10809_1006
10.2
P10809_1024
16.4
P10809_1043
11.0
P10809_1062
13.2
P10809_1083
8.9
P10809_1097
15.6
Memory CD4 T-cell nTPM: 18.4
Samples: 6
Max nTPM: 22.8
Min nTPM: 14.9
P10809_1014
14.9
P10809_1026
20.5
P10809_1045
17.3
P10809_1064
15.3
P10809_1086
19.7
P10809_1113
22.8
Memory CD8 T-cell nTPM: 14.9
Samples: 5
Max nTPM: 17.9
Min nTPM: 12.2
P10809_1012
17.8
P10809_1027
12.8
P10809_1046
17.9
P10809_1065
13.6
P10809_1111
12.2
Naive CD4 T-cell nTPM: 9.5
Samples: 6
Max nTPM: 14.6
Min nTPM: 5.5
P10809_1015
8.1
P10809_1030
14.6
P10809_1049
9.1
P10809_1068
9.6
P10809_1085
5.5
P10809_1112
9.9
Naive CD8 T-cell nTPM: 8.1
Samples: 6
Max nTPM: 13.7
Min nTPM: 1.3
P10809_1016
6.6
P10809_1031
1.3
P10809_1050
7.3
P10809_1069
13.7
P10809_1087
11.9
P10809_1110
7.6
T-reg nTPM: 13.1
Samples: 6
Max nTPM: 18.8
Min nTPM: 11.0
P10809_1018
11.0
P10809_1037
12.1
P10809_1056
11.5
P10809_1075
11.5
P10809_1094
18.8
P10809_1106
13.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 21.9
Samples: 4
Max nTPM: 29.5
Min nTPM: 11.9
RHH5202_R3573
11.9
RHH5230_R3602
22.8
RHH5259_R3631
29.5
RHH5288_R3660
23.5
Effector memory CD8 T-cell nTPM: 33.1
Samples: 4
Max nTPM: 48.9
Min nTPM: 19.0
RHH5203_R3574
29.1
RHH5231_R3603
35.4
RHH5260_R3632
48.9
RHH5289_R3661
19.0
MAIT T-cell nTPM: 21.7
Samples: 4
Max nTPM: 22.6
Min nTPM: 19.7
RHH5233_R3605
22.4
RHH5205_R3576
19.7
RHH5262_R3634
22.6
RHH5297_R3663
22.1
Memory CD4 T-cell TFH nTPM: 31.2
Samples: 4
Max nTPM: 41.6
Min nTPM: 17.5
RHH5300_R3666
37.8
RHH5236_R3608
28.0
RHH5265_R3637
41.6
RHH5208_R3579
17.5
Memory CD4 T-cell Th1 nTPM: 30.6
Samples: 4
Max nTPM: 37.9
Min nTPM: 21.9
RHH5210_R3581
29.3
RHH5302_R3668
21.9
RHH5238_R3610
37.9
RHH5267_R3639
33.4
Memory CD4 T-cell Th1/Th17 nTPM: 41.7
Samples: 4
Max nTPM: 50.3
Min nTPM: 32.2
RHH5303_R3669
40.5
RHH5211_R3582
32.2
RHH5239_R3611
50.3
RHH5268_R3640
43.7
Memory CD4 T-cell Th17 nTPM: 50.7
Samples: 4
Max nTPM: 62.6
Min nTPM: 37.3
RHH5304_R3670
37.3
RHH5212_R3583
52.9
RHH5240_R3612
49.8
RHH5269_R3641
62.6
Memory CD4 T-cell Th2 nTPM: 43.4
Samples: 4
Max nTPM: 47.2
Min nTPM: 36.8
RHH5305_R3671
36.8
RHH5213_R3584
47.2
RHH5241_R3613
43.1
RHH5270_R3642
46.4
Naive CD4 T-cell nTPM: 20.8
Samples: 4
Max nTPM: 22.9
Min nTPM: 19.5
RHH5306_R3672
22.9
RHH5214_R3585
19.5
RHH5242_R3614
20.1
RHH5271_R3643
20.8
Naive CD8 T-cell nTPM: 18.2
Samples: 4
Max nTPM: 25.4
Min nTPM: 11.9
RHH5201_R3572
15.8
RHH5229_R3601
11.9
RHH5258_R3630
25.4
RHH5287_R3659
19.5
Non-Vd2 gdTCR nTPM: 26.4
Samples: 4
Max nTPM: 35.8
Min nTPM: 17.3
RHH5235_R3607
26.9
RHH5264_R3636
35.8
RHH5207_R3578
25.6
RHH5299_R3665
17.3
T-reg nTPM: 33.8
Samples: 4
Max nTPM: 49.7
Min nTPM: 22.7
RHH5301_R3667
22.7
RHH5237_R3609
38.2
RHH5266_R3638
49.7
RHH5209_R3580
24.4
Terminal effector memory CD4 T-cell nTPM: 43.9
Samples: 2
Max nTPM: 46.4
Min nTPM: 41.3
RHH5243_R3615
46.4
RHH5272_R3644
41.3
Terminal effector memory CD8 T-cell nTPM: 36.9
Samples: 4
Max nTPM: 58.7
Min nTPM: 22.2
RHH5232_R3604
31.2
RHH5204_R3575
22.2
RHH5261_R3633
58.7
RHH5296_R3662
35.3
Vd2 gdTCR nTPM: 26.1
Samples: 4
Max nTPM: 35.2
Min nTPM: 18.1
RHH5234_R3606
18.1
RHH5206_R3577
25.2
RHH5263_R3635
35.2
RHH5298_R3664
25.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
