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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
71.2
nTPM
Monaco:
56.1
nTPM
Schmiedel:
0.0
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.2
HPA sample
nTPM
gdT-cell nTPM: 45.8
Samples: 6
Max nTPM: 57.5
Min nTPM: 32.6
P10809_1007
32.6
P10809_1022
57.5
P10809_1041
46.6
P10809_1060
50.9
P10809_1077
40.5
P10809_1098
46.4
MAIT T-cell nTPM: 30.8
Samples: 6
Max nTPM: 45.9
Min nTPM: 25.7
P10809_1006
27.4
P10809_1024
28.9
P10809_1043
25.7
P10809_1062
45.9
P10809_1083
27.8
P10809_1097
29.1
Memory CD4 T-cell nTPM: 35.6
Samples: 6
Max nTPM: 50.8
Min nTPM: 26.0
P10809_1014
29.2
P10809_1026
50.8
P10809_1045
26.0
P10809_1064
41.6
P10809_1086
32.0
P10809_1113
34.2
Memory CD8 T-cell nTPM: 39.2
Samples: 5
Max nTPM: 54.6
Min nTPM: 27.5
P10809_1012
27.5
P10809_1027
47.6
P10809_1046
35.5
P10809_1065
54.6
P10809_1111
30.8
Naive CD4 T-cell nTPM: 17.7
Samples: 6
Max nTPM: 24.8
Min nTPM: 13.8
P10809_1015
13.8
P10809_1030
19.3
P10809_1049
18.3
P10809_1068
15.4
P10809_1085
24.8
P10809_1112
14.8
Naive CD8 T-cell nTPM: 29.0
Samples: 6
Max nTPM: 45.0
Min nTPM: 17.2
P10809_1016
17.2
P10809_1031
33.8
P10809_1050
21.9
P10809_1069
45.0
P10809_1087
34.4
P10809_1110
21.4
T-reg nTPM: 71.2
Samples: 6
Max nTPM: 102.0
Min nTPM: 59.7
P10809_1018
65.1
P10809_1037
68.4
P10809_1056
64.9
P10809_1075
102.0
P10809_1094
66.9
P10809_1106
59.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 32.5
Samples: 4
Max nTPM: 45.8
Min nTPM: 22.2
RHH5202_R3573
29.3
RHH5230_R3602
32.7
RHH5259_R3631
22.2
RHH5288_R3660
45.8
Effector memory CD8 T-cell nTPM: 38.0
Samples: 4
Max nTPM: 48.4
Min nTPM: 32.5
RHH5203_R3574
48.4
RHH5231_R3603
33.2
RHH5260_R3632
32.5
RHH5289_R3661
37.9
MAIT T-cell nTPM: 33.5
Samples: 4
Max nTPM: 46.4
Min nTPM: 23.4
RHH5233_R3605
31.8
RHH5205_R3576
23.4
RHH5262_R3634
32.4
RHH5297_R3663
46.4
Memory CD4 T-cell TFH nTPM: 29.7
Samples: 4
Max nTPM: 36.9
Min nTPM: 17.8
RHH5300_R3666
36.3
RHH5236_R3608
36.9
RHH5265_R3637
27.9
RHH5208_R3579
17.8
Memory CD4 T-cell Th1 nTPM: 34.1
Samples: 4
Max nTPM: 52.6
Min nTPM: 25.8
RHH5210_R3581
30.3
RHH5302_R3668
52.6
RHH5238_R3610
25.8
RHH5267_R3639
27.7
Memory CD4 T-cell Th1/Th17 nTPM: 34.4
Samples: 4
Max nTPM: 57.2
Min nTPM: 15.4
RHH5303_R3669
57.2
RHH5211_R3582
41.1
RHH5239_R3611
15.4
RHH5268_R3640
23.9
Memory CD4 T-cell Th17 nTPM: 35.3
Samples: 4
Max nTPM: 54.3
Min nTPM: 23.8
RHH5304_R3670
32.7
RHH5212_R3583
54.3
RHH5240_R3612
30.2
RHH5269_R3641
23.8
Memory CD4 T-cell Th2 nTPM: 34.0
Samples: 4
Max nTPM: 40.1
Min nTPM: 22.2
RHH5305_R3671
37.9
RHH5213_R3584
35.8
RHH5241_R3613
40.1
RHH5270_R3642
22.2
Naive CD4 T-cell nTPM: 24.2
Samples: 4
Max nTPM: 30.1
Min nTPM: 16.1
RHH5306_R3672
30.1
RHH5214_R3585
28.8
RHH5242_R3614
21.8
RHH5271_R3643
16.1
Naive CD8 T-cell nTPM: 16.2
Samples: 4
Max nTPM: 26.0
Min nTPM: 7.0
RHH5201_R3572
7.0
RHH5229_R3601
12.3
RHH5258_R3630
19.3
RHH5287_R3659
26.0
Non-Vd2 gdTCR nTPM: 46.3
Samples: 4
Max nTPM: 66.9
Min nTPM: 31.5
RHH5235_R3607
31.5
RHH5264_R3636
45.5
RHH5207_R3578
41.2
RHH5299_R3665
66.9
T-reg nTPM: 36.1
Samples: 4
Max nTPM: 52.9
Min nTPM: 25.9
RHH5301_R3667
52.9
RHH5237_R3609
34.0
RHH5266_R3638
25.9
RHH5209_R3580
31.6
Terminal effector memory CD4 T-cell nTPM: 36.6
Samples: 2
Max nTPM: 46.1
Min nTPM: 27.1
RHH5243_R3615
27.1
RHH5272_R3644
46.1
Terminal effector memory CD8 T-cell nTPM: 56.1
Samples: 4
Max nTPM: 78.8
Min nTPM: 37.2
RHH5232_R3604
52.1
RHH5204_R3575
78.8
RHH5261_R3633
37.2
RHH5296_R3662
56.4
Vd2 gdTCR nTPM: 49.1
Samples: 4
Max nTPM: 74.3
Min nTPM: 32.3
RHH5234_R3606
32.3
RHH5206_R3577
74.3
RHH5263_R3635
37.3
RHH5298_R3664
52.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
