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  • NPM1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:198.5 nTPM
HPA Brain:148.3 nTPM
GTEx:198.5 nTPM
FANTOM5:108.8 Scaled Tags Per Million
Pig:85.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.3
Sample id Sample description nTPM
Amygdala
nTPM: 148.3
2695 Female, age 67, right hemisphere 180.4
2814 Male, age 76, right hemisphere 158.2
2514 Male, age 75, right hemisphere 150.3
1987 Female, age 91, left hemisphere 138.1
2517 Female, age 94, left hemisphere 114.6
Basal amygdala
nTPM: 109.5
2827 Female, age 67, right hemisphere 141.4
2609 Male, age 75, right hemisphere 112.9
2110 Male, age 80, left hemisphere 109.6
1955 Male, age 76, both hemispheres 107.2
2685 Female, age 94, left hemisphere 96.3
2243 Female, age 91, right hemisphere 89.3
Central amygdala
nTPM: 132.6
2826 Female, age 94, left hemisphere 199.5
2515 Male, age 75, right hemisphere 134.1
1905 Male, age 76, both hemispheres 118.8
2239 Male, age 80, left hemisphere 109.1
2701 Female, age 91, right hemisphere 101.5
Corticomedial amygdala
nTPM: 105.6
2240 Male, age 76, both hemispheres 126.4
2829 Male, age 80, left hemisphere 117.0
2428 Male, age 75, right hemisphere 109.8
2535 Female, age 67, right hemisphere 105.0
2242 Female, age 91, right hemisphere 97.5
2429 Female, age 94, left hemisphere 78.0
Lateral amygdala
nTPM: 128.4
2830 Female, age 67, right hemisphere 190.7
2516 Male, age 75, right hemisphere 138.9
2534 Female, age 94, left hemisphere 125.1
1883 Male, age 76, both hemispheres 124.8
2256 Male, age 80, left hemisphere 108.8
2255 Female, age 91, right hemisphere 82.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 198.5
Samples: 181

Max nTPM: 431.1
Min nTPM: 140.3
Std nTPM: 40.5
Median nTPM: 189.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 431.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 358.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 347.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 316.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 309.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 297.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 294.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 291.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 281.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 262.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 261.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 259.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 259.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 256.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 254.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 253.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 249.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 248.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 244.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 244.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 244.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 239.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 238.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 231.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 231.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 229.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 228.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 228.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 227.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 227.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 227.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 226.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 226.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 222.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 222.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 220.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 219.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 218.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 216.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 216.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 216.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 215.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 215.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 214.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 213.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 213.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 212.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 210.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 209.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 208.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 208.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 208.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 206.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 205.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 205.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 205.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 203.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 203.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 203.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 202.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 202.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 202.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 202.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 201.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 199.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 199.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 198.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 198.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 198.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 197.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 197.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 197.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 197.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 197.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 197.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 196.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 196.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 195.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 195.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 195.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 194.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 194.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 193.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 192.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 192.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 191.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 191.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 191.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 190.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 190.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 189.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 189.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 188.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 188.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 188.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 188.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 187.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 187.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 187.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 187.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 187.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 187.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 187.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 186.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 185.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 185.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 184.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 184.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 183.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 183.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 182.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 182.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 181.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 181.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 181.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 181.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 180.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 179.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 179.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 179.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 178.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 178.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 178.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 176.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 175.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 175.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 175.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 174.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 174.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 174.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 174.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 174.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 173.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 172.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 171.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 171.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 171.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 171.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 170.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 170.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 169.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 169.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 168.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 168.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 168.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 168.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 167.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 167.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 167.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 167.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 167.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 167.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 166.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 166.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 166.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 165.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 164.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 164.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 163.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 163.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 161.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 161.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 160.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 159.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 158.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 156.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 156.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 156.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 156.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 155.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 155.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 154.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 154.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 152.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 150.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 150.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 147.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 147.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 147.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 141.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 140.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

108.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 108.8
FF:10151-102I7 76 years, female 108.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.7
Pig sample Sample description nTPM
Amygdala
nTPM: 85.7
Samples: 4

Max nTPM: 109.4
Min nTPM: 68.4
Sample A Female 109.4
Sample B Female 89.9
Sample C Male 75.1
Sample D Male 68.4

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