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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
59.8
nTPM
HPA Brain:
57.6
nTPM
GTEx:
59.8
nTPM
FANTOM5:
92.5
Scaled Tags Per Million
Pig:
24.1
nTPM
Mouse:
14.5
nTPM
Allen mouse:
0.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
57.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 46.4
2586
Male, age 75, left hemisphere
56.3
2828
Female, age 72, unknown
51.6
2411
Female, age 72, unknown
48.9
1827
Male, age 72, unknown
48.1
2666
Male, age 74, left hemisphere
46.6
1833
Male, age 53, unknown
46.4
1870
Female, age 42, unknown
43.4
2219
Male, age 76, both hemispheres
41.8
1830
Male, age 51, unknown
41.2
2019
Male, age 18, unknown
39.4
Dorsal raphe nucleus nTPM: 52.5
2298
Female, age 72, unknown
70.6
2016
Female, age 72, unknown
50.9
2047
Male, age 72, unknown
48.8
1828
Male, age 53, unknown
46.7
2750
Male, age 76, both hemispheres
45.4
Inferior colliculus nTPM: 49.0
2097
Female, age 72, unknown
52.0
2849
Male, age 72, unknown
51.3
1848
Female, age 42, unknown
47.1
1890
Male, age 53, unknown
45.7
Median raphe nucleus nTPM: 51.5
2220
Male, age 76, midline
51.5
Periaquaductal grey, anterior nTPM: 57.6
1795
Male, age 51, unknown
61.0
2502
Female, age 75, unknown
56.7
1947
Male, age 18, unknown
55.0
Periaquaductal grey, dorsal nTPM: 50.9
2850
Male, age 76, both hemispheres
56.1
1840
Male, age 53, unknown
54.9
1831
Male, age 72, unknown
48.7
2464
Female, age 72, unknown
43.8
Periaquaductal grey, lateral nTPM: 51.4
2272
Male, age 74, both hemispheres
59.5
2140
Male, age 76, both hemispheres
49.8
2053
Male, age 18, unknown
45.0
Pretectal area nTPM: 51.4
2273
Male, age 74, both hemispheres
62.0
1944
Female, age 72, unknown
57.5
2667
Female, age 75, unknown
55.1
1816
Male, age 51, unknown
53.9
1817
Female, age 42, unknown
53.7
2224
Female, age 72, unknown
52.8
1815
Male, age 53, unknown
49.0
2825
Male, age 18, unknown
49.0
2007
Male, age 72, unknown
48.3
2407
Male, age 75, both hemispheres
43.5
2316
Male, age 76, right hemisphere
40.3
Red nucleus nTPM: 42.9
2725
Female, age 75, unknown
54.4
2227
Male, age 72, unknown
47.3
1904
Male, age 53, unknown
45.4
2769
Male, age 72, unknown
45.2
2584
Male, age 75, left hemisphere
44.6
2785
Male, age 18, unknown
44.6
2503
Female, age 72, unknown
44.3
1821
Female, age 72, unknown
41.3
1865
Male, age 51, unknown
39.0
1954
Female, age 42, unknown
38.5
2588
Male, age 74, left hemisphere
36.1
2823
Male, age 76, right hemisphere
34.3
Substantia nigra nTPM: 51.2
1916
Female, age 42, unknown
70.2
2665
Male, age 74, both hemispheres
59.1
1851
Male, age 51, unknown
55.3
2699
Male, age 18, unknown
51.6
1889
Female, age 72, unknown
49.7
2583
Male, age 75, right hemisphere
47.9
1941
Male, age 53, unknown
46.5
2409
Female, age 72, unknown
44.7
2241
Male, age 72, unknown
43.5
2590
Female, age 75, unknown
43.4
Superior colliculus nTPM: 48.1
2261
Male, age 18, unknown
64.4
1796
Male, age 53, unknown
53.5
2664
Male, age 75, both hemispheres
50.5
2087
Female, age 72, unknown
50.4
1995
Male, age 72, unknown
50.0
1913
Female, age 42, unknown
47.4
1839
Male, age 51, unknown
46.2
2587
Male, age 74, left hemisphere
42.4
2668
Female, age 75, unknown
40.8
1895
Male, age 76, right hemisphere
35.1
Ventral tegmental area nTPM: 49.3
1915
Female, age 42, unknown
57.5
2021
Male, age 53, unknown
50.6
1942
Male, age 51, unknown
50.4
2218
Male, age 76, both hemispheres
49.2
2410
Female, age 72, unknown
47.3
2223
Female, age 72, unknown
40.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 59.8
Samples: 139
Max nTPM: 95.5
Min nTPM: 25.4
Std nTPM: 13.6
Median nTPM: 59.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
95.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
91.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
89.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
88.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
88.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
83.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
83.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
81.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
81.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
81.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
80.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
79.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
77.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
76.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
76.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
75.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
75.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
74.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
74.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
74.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
73.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
73.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
73.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
73.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
72.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
72.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
72.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
71.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
70.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
69.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
69.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
69.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
68.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
68.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
68.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
68.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
67.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
67.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
67.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
67.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
67.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
66.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
66.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
65.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
65.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
65.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
65.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
65.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
64.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
64.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
64.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
64.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
64.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
63.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
63.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
62.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
62.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
62.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
62.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
62.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
62.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
62.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
61.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
61.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
61.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
61.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
60.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
60.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
60.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
59.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
58.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
57.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
57.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
57.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
57.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
57.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
57.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
57.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
56.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
56.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
56.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
56.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
56.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
56.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
55.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
55.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
55.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
55.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
55.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
54.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
54.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
54.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
54.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
54.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
54.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
53.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
53.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
53.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
53.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
53.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
52.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
51.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
51.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
51.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
50.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
49.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
49.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
49.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
49.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
49.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
48.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
48.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
48.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
48.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
47.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
47.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
47.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
47.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
47.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
44.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
44.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
44.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
44.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
43.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
43.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
42.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
41.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
41.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
40.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
39.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
38.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
38.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
36.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
35.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
35.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
29.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
28.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
26.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
25.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 14.5
Samples: 4
Max nTPM: 16.5
Min nTPM: 13.4
Sample A
Male
14.2
Sample B
Male
13.4
Sample C
Female
13.9
Sample D
Female
16.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.