MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:280.1 nTPM
HPA Brain:148.1 nTPM
GTEx:280.1 nTPM
FANTOM5:140.3 Scaled Tags Per Million
Pig:71.0 nTPM
Mouse:364.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 148.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.4
2586 Male, age 75, left hemisphere 145.5
1827 Male, age 72, unknown 130.8
2666 Male, age 74, left hemisphere 128.3
1870 Female, age 42, unknown 127.2
2219 Male, age 76, both hemispheres 125.9
2019 Male, age 18, unknown 117.0
2828 Female, age 72, unknown 115.3
2411 Female, age 72, unknown 114.2
1833 Male, age 53, unknown 107.6
1830 Male, age 51, unknown 102.5
Dorsal raphe nucleus
nTPM: 139.6
2298 Female, age 72, unknown 189.9
2047 Male, age 72, unknown 138.5
2750 Male, age 76, both hemispheres 132.0
1828 Male, age 53, unknown 130.5
2016 Female, age 72, unknown 107.1
Inferior colliculus
nTPM: 118.1
2097 Female, age 72, unknown 135.0
1890 Male, age 53, unknown 116.2
1848 Female, age 42, unknown 114.4
2849 Male, age 72, unknown 106.9
Median raphe nucleus
nTPM: 148.1
2220 Male, age 76, midline 148.1
Periaquaductal grey, anterior
nTPM: 144.1
1947 Male, age 18, unknown 153.9
1795 Male, age 51, unknown 143.0
2502 Female, age 75, unknown 135.4
Periaquaductal grey, dorsal
nTPM: 106.0
1840 Male, age 53, unknown 121.0
2850 Male, age 76, both hemispheres 106.9
1831 Male, age 72, unknown 103.2
2464 Female, age 72, unknown 92.9
Periaquaductal grey, lateral
nTPM: 109.5
2053 Male, age 18, unknown 123.1
2272 Male, age 74, both hemispheres 109.9
2140 Male, age 76, both hemispheres 95.5
Pretectal area
nTPM: 136.0
2224 Female, age 72, unknown 163.7
2007 Male, age 72, unknown 161.5
1816 Male, age 51, unknown 160.3
2667 Female, age 75, unknown 152.6
1817 Female, age 42, unknown 141.4
1944 Female, age 72, unknown 134.0
1815 Male, age 53, unknown 129.5
2316 Male, age 76, right hemisphere 122.7
2825 Male, age 18, unknown 120.7
2273 Male, age 74, both hemispheres 119.7
2407 Male, age 75, both hemispheres 90.1
Red nucleus
nTPM: 118.5
1821 Female, age 72, unknown 155.4
2503 Female, age 72, unknown 138.6
2769 Male, age 72, unknown 124.1
2227 Male, age 72, unknown 123.6
1904 Male, age 53, unknown 117.9
2725 Female, age 75, unknown 112.7
1865 Male, age 51, unknown 111.3
2785 Male, age 18, unknown 110.6
1954 Female, age 42, unknown 110.5
2588 Male, age 74, left hemisphere 109.1
2823 Male, age 76, right hemisphere 104.7
2584 Male, age 75, left hemisphere 103.7
Substantia nigra
nTPM: 137.2
1916 Female, age 42, unknown 196.7
1851 Male, age 51, unknown 170.6
1889 Female, age 72, unknown 149.9
1941 Male, age 53, unknown 140.6
2699 Male, age 18, unknown 129.6
2665 Male, age 74, both hemispheres 128.9
2241 Male, age 72, unknown 123.6
2583 Male, age 75, right hemisphere 120.6
2590 Female, age 75, unknown 112.9
2409 Female, age 72, unknown 98.2
Superior colliculus
nTPM: 121.2
1796 Male, age 53, unknown 145.4
2668 Female, age 75, unknown 140.2
2587 Male, age 74, left hemisphere 129.2
2261 Male, age 18, unknown 126.5
2664 Male, age 75, both hemispheres 122.6
2087 Female, age 72, unknown 118.2
1913 Female, age 42, unknown 114.5
1895 Male, age 76, right hemisphere 107.9
1839 Male, age 51, unknown 106.6
1995 Male, age 72, unknown 101.3
Ventral tegmental area
nTPM: 133.5
1915 Female, age 42, unknown 155.6
2218 Male, age 76, both hemispheres 154.6
2223 Female, age 72, unknown 126.9
2410 Female, age 72, unknown 126.1
1942 Male, age 51, unknown 124.1
2021 Male, age 53, unknown 113.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 280.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 280.1
Samples: 183

Max nTPM: 503.8
Min nTPM: 121.7
Std nTPM: 68.8
Median nTPM: 274.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 503.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 462.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 458.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 458.1
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 454.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 432.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 431.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 427.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 426.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 407.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 406.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 140.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 140.3
FF:10158-103A5 76 years, female 140.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 71.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.9
Samples: 4

Max nTPM: 65.8
Min nTPM: 32.4
Sample A Female 65.8
Sample B Female 37.3
Sample C Male 44.0
Sample D Male 32.4
Midbrain
nTPM: 51.9
Samples: 4

Max nTPM: 62.6
Min nTPM: 43.3
Sample A Female 47.1
Sample B Female 43.3
Sample C Male 62.6
Sample D Male 54.7
Periaqueductal gray
nTPM: 35.1
Samples: 3

Max nTPM: 40.4
Min nTPM: 29.0
Sample B Female 35.8
Sample C Male 40.4
Sample D Male 29.0
Superior colliculi
nTPM: 71.0
Samples: 4

Max nTPM: 87.9
Min nTPM: 55.0
Sample A Female 87.9
Sample B Female 60.3
Sample C Male 80.7
Sample D Male 55.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 364.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 364.6
Samples: 4

Max nTPM: 408.1
Min nTPM: 327.8
Sample A Male 408.1
Sample B Male 331.8
Sample C Female 327.8
Sample D Female 390.7

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