MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.1 nTPM
HPA Brain:28.0 nTPM
GTEx:67.1 nTPM
FANTOM5:94.2 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.2
1870 Female, age 42, unknown 27.4
2666 Male, age 74, left hemisphere 21.6
2828 Female, age 72, unknown 21.3
1830 Male, age 51, unknown 21.2
1833 Male, age 53, unknown 19.4
2019 Male, age 18, unknown 17.5
2411 Female, age 72, unknown 16.7
1827 Male, age 72, unknown 16.2
2586 Male, age 75, left hemisphere 16.1
2219 Male, age 76, both hemispheres 14.4
Dorsal raphe nucleus
nTPM: 26.6
2016 Female, age 72, unknown 31.0
1828 Male, age 53, unknown 26.8
2298 Female, age 72, unknown 26.3
2750 Male, age 76, both hemispheres 24.8
2047 Male, age 72, unknown 24.1
Inferior colliculus
nTPM: 23.8
1890 Male, age 53, unknown 25.8
2849 Male, age 72, unknown 24.8
1848 Female, age 42, unknown 22.3
2097 Female, age 72, unknown 22.3
Median raphe nucleus
nTPM: 27.9
2220 Male, age 76, midline 27.9
Periaquaductal grey, anterior
nTPM: 21.7
1795 Male, age 51, unknown 23.1
2502 Female, age 75, unknown 22.6
1947 Male, age 18, unknown 19.4
Periaquaductal grey, dorsal
nTPM: 26.8
2850 Male, age 76, both hemispheres 40.0
1840 Male, age 53, unknown 25.2
1831 Male, age 72, unknown 23.6
2464 Female, age 72, unknown 18.3
Periaquaductal grey, lateral
nTPM: 28.0
2140 Male, age 76, both hemispheres 29.5
2272 Male, age 74, both hemispheres 28.9
2053 Male, age 18, unknown 25.5
Pretectal area
nTPM: 20.4
2273 Male, age 74, both hemispheres 26.6
2224 Female, age 72, unknown 23.7
1817 Female, age 42, unknown 21.7
2667 Female, age 75, unknown 21.6
2316 Male, age 76, right hemisphere 20.9
2825 Male, age 18, unknown 19.3
1815 Male, age 53, unknown 19.2
1944 Female, age 72, unknown 18.5
2007 Male, age 72, unknown 18.2
2407 Male, age 75, both hemispheres 17.7
1816 Male, age 51, unknown 16.4
Red nucleus
nTPM: 26.2
1954 Female, age 42, unknown 32.1
2769 Male, age 72, unknown 31.2
2503 Female, age 72, unknown 28.8
1865 Male, age 51, unknown 28.3
2227 Male, age 72, unknown 28.2
2823 Male, age 76, right hemisphere 27.6
2725 Female, age 75, unknown 26.9
1821 Female, age 72, unknown 26.3
1904 Male, age 53, unknown 26.2
2785 Male, age 18, unknown 23.3
2588 Male, age 74, left hemisphere 18.5
2584 Male, age 75, left hemisphere 17.0
Substantia nigra
nTPM: 22.3
2699 Male, age 18, unknown 36.5
1916 Female, age 42, unknown 26.2
1851 Male, age 51, unknown 24.5
1889 Female, age 72, unknown 22.4
2590 Female, age 75, unknown 22.4
2665 Male, age 74, both hemispheres 21.5
1941 Male, age 53, unknown 18.8
2583 Male, age 75, right hemisphere 17.8
2241 Male, age 72, unknown 16.8
2409 Female, age 72, unknown 16.5
Superior colliculus
nTPM: 20.4
1995 Male, age 72, unknown 28.6
1913 Female, age 42, unknown 27.5
2587 Male, age 74, left hemisphere 25.2
1796 Male, age 53, unknown 21.8
1895 Male, age 76, right hemisphere 18.3
1839 Male, age 51, unknown 18.2
2261 Male, age 18, unknown 17.9
2087 Female, age 72, unknown 17.4
2668 Female, age 75, unknown 16.5
2664 Male, age 75, both hemispheres 13.1
Ventral tegmental area
nTPM: 24.1
2218 Male, age 76, both hemispheres 28.4
2223 Female, age 72, unknown 27.0
2021 Male, age 53, unknown 23.6
1915 Female, age 42, unknown 23.0
1942 Male, age 51, unknown 21.8
2410 Female, age 72, unknown 20.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 67.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.1
Samples: 183

Max nTPM: 157.6
Min nTPM: 12.3
Std nTPM: 28.6
Median nTPM: 61.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 157.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 149.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 148.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 142.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 139.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 135.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 132.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 132.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 131.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 128.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 119.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.2
FF:10158-103A5 76 years, female 94.2

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