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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.9
nTPM
Monaco:
189.4
nTPM
Schmiedel:
186.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.9
HPA sample
nTPM
gdT-cell nTPM: 11.1
Samples: 6
Max nTPM: 23.4
Min nTPM: 6.9
P10809_1007
7.8
P10809_1022
11.7
P10809_1041
7.4
P10809_1060
23.4
P10809_1077
9.4
P10809_1098
6.9
MAIT T-cell nTPM: 11.7
Samples: 6
Max nTPM: 14.4
Min nTPM: 9.6
P10809_1006
9.8
P10809_1024
9.6
P10809_1043
11.0
P10809_1062
14.4
P10809_1083
12.8
P10809_1097
12.6
Memory CD4 T-cell nTPM: 10.6
Samples: 6
Max nTPM: 12.8
Min nTPM: 8.9
P10809_1014
9.2
P10809_1026
8.9
P10809_1045
12.0
P10809_1064
12.8
P10809_1086
10.8
P10809_1113
9.6
Memory CD8 T-cell nTPM: 11.2
Samples: 5
Max nTPM: 14.5
Min nTPM: 8.7
P10809_1012
9.0
P10809_1027
14.5
P10809_1046
10.4
P10809_1065
13.5
P10809_1111
8.7
Naive CD4 T-cell nTPM: 15.9
Samples: 6
Max nTPM: 22.6
Min nTPM: 11.8
P10809_1015
15.1
P10809_1030
11.8
P10809_1049
15.7
P10809_1068
22.6
P10809_1085
14.3
P10809_1112
15.8
Naive CD8 T-cell nTPM: 12.6
Samples: 6
Max nTPM: 20.6
Min nTPM: 8.6
P10809_1016
9.3
P10809_1031
20.6
P10809_1050
14.2
P10809_1069
8.6
P10809_1087
10.6
P10809_1110
12.5
T-reg nTPM: 12.7
Samples: 6
Max nTPM: 19.8
Min nTPM: 8.6
P10809_1018
8.6
P10809_1037
13.8
P10809_1056
11.9
P10809_1075
19.8
P10809_1094
9.1
P10809_1106
13.0
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
189.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 162.7
Samples: 4
Max nTPM: 249.6
Min nTPM: 122.9
RHH5202_R3573
249.6
RHH5230_R3602
133.6
RHH5259_R3631
122.9
RHH5288_R3660
144.7
Effector memory CD8 T-cell nTPM: 111.0
Samples: 4
Max nTPM: 147.4
Min nTPM: 77.4
RHH5203_R3574
147.4
RHH5231_R3603
79.2
RHH5260_R3632
77.4
RHH5289_R3661
139.9
MAIT T-cell nTPM: 135.2
Samples: 4
Max nTPM: 176.6
Min nTPM: 106.0
RHH5233_R3605
149.6
RHH5205_R3576
176.6
RHH5262_R3634
106.0
RHH5297_R3663
108.6
Memory CD4 T-cell TFH nTPM: 189.4
Samples: 4
Max nTPM: 289.9
Min nTPM: 134.9
RHH5300_R3666
134.9
RHH5236_R3608
172.5
RHH5265_R3637
160.4
RHH5208_R3579
289.9
Memory CD4 T-cell Th1 nTPM: 144.9
Samples: 4
Max nTPM: 176.1
Min nTPM: 121.3
RHH5210_R3581
176.1
RHH5302_R3668
131.8
RHH5238_R3610
150.4
RHH5267_R3639
121.3
Memory CD4 T-cell Th1/Th17 nTPM: 126.6
Samples: 4
Max nTPM: 162.3
Min nTPM: 93.6
RHH5303_R3669
133.9
RHH5211_R3582
162.3
RHH5239_R3611
116.6
RHH5268_R3640
93.6
Memory CD4 T-cell Th17 nTPM: 124.7
Samples: 4
Max nTPM: 171.5
Min nTPM: 85.4
RHH5304_R3670
112.1
RHH5212_R3583
129.9
RHH5240_R3612
171.5
RHH5269_R3641
85.4
Memory CD4 T-cell Th2 nTPM: 142.3
Samples: 4
Max nTPM: 175.9
Min nTPM: 119.6
RHH5305_R3671
119.6
RHH5213_R3584
139.6
RHH5241_R3613
175.9
RHH5270_R3642
134.2
Naive CD4 T-cell nTPM: 174.3
Samples: 4
Max nTPM: 227.6
Min nTPM: 130.9
RHH5306_R3672
162.7
RHH5214_R3585
227.6
RHH5242_R3614
175.8
RHH5271_R3643
130.9
Naive CD8 T-cell nTPM: 169.0
Samples: 4
Max nTPM: 290.8
Min nTPM: 105.7
RHH5201_R3572
290.8
RHH5229_R3601
105.7
RHH5258_R3630
114.9
RHH5287_R3659
164.4
Non-Vd2 gdTCR nTPM: 107.4
Samples: 4
Max nTPM: 125.1
Min nTPM: 87.8
RHH5235_R3607
125.1
RHH5264_R3636
87.8
RHH5207_R3578
118.5
RHH5299_R3665
98.1
T-reg nTPM: 134.6
Samples: 4
Max nTPM: 202.5
Min nTPM: 103.5
RHH5301_R3667
103.5
RHH5237_R3609
116.6
RHH5266_R3638
115.6
RHH5209_R3580
202.5
Terminal effector memory CD4 T-cell nTPM: 103.6
Samples: 2
Max nTPM: 112.2
Min nTPM: 94.9
RHH5243_R3615
94.9
RHH5272_R3644
112.2
Terminal effector memory CD8 T-cell nTPM: 112.0
Samples: 4
Max nTPM: 145.4
Min nTPM: 83.4
RHH5232_R3604
112.4
RHH5204_R3575
145.4
RHH5261_R3633
83.4
RHH5296_R3662
106.6
Vd2 gdTCR nTPM: 125.4
Samples: 4
Max nTPM: 148.9
Min nTPM: 99.6
RHH5234_R3606
148.9
RHH5206_R3577
124.5
RHH5263_R3635
99.6
RHH5298_R3664
128.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
