We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HECTD4
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • HECTD4
TISSUE PRIMARY DATA PUTAMEN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:60.6 nTPM
GTEx:1.9 nTPM
FANTOM5:54.7 Scaled Tags Per Million
Pig:45.4 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.6
Sample id Sample description nTPM
Putamen
nTPM: 60.6
2466 Female, age 79, unknown 66.7
1838 Male, age 80, right hemisphere 65.3
2647 Male, age 75, left hemisphere 62.6
1829 Male, age 74, unknown 61.0
1937 Female, age 91, right hemisphere 60.3
2489 Female, age 72, unknown 57.3
2482 Female, age 94, left hemisphere 51.2

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.9
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 1.9
Samples: 254

Max nTPM: 5.8
Min nTPM: 0.1
Std nTPM: 1.0
Median nTPM: 1.6
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 5.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 5.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 5.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 5.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 4.6
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 4.2
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 4.0
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 3.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 3.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 3.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 3.8
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 3.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 3.5
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 3.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 3.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 3.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 3.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 3.4
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 3.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 3.4
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 3.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 3.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 3.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 3.3
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 3.3
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 3.3
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 3.3
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 3.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 3.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 3.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 3.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 3.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 3.1
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 3.1
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 3.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 3.1
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 3.0
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 3.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 3.0
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 3.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 3.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 2.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 2.9
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 2.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 2.9
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 2.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 2.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 2.8
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 2.7
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 2.7
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 2.7
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 2.7
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 2.6
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 2.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 2.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 2.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 2.5
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 2.5
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 2.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 2.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 2.5
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 2.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 2.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 2.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 2.4
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 2.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 2.4
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 2.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 2.3
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 2.3
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 2.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 2.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 2.3
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 2.3
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 2.3
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 2.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 2.2
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 2.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 2.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 2.2
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 2.2
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 2.2
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 2.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 2.2
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 2.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 2.1
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 2.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 2.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 2.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 2.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 2.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 2.1
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 2.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 2.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 2.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 2.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 2.0
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 2.0
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 2.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 1.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1.9
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 1.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 1.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 1.9
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 1.9
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 1.9
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 1.9
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 1.9
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1.8
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 1.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 1.8
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 1.8
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 1.8
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 1.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 1.8
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 1.8
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 1.7
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 1.7
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 1.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 1.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 1.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 1.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 1.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 1.7
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 1.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 1.6
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 1.6
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 1.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 1.6
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 1.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 1.6
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 1.6
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 1.6
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 1.6
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 1.6
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 1.5
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 1.5
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 1.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 1.5
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 1.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 1.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 1.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 1.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 1.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 1.5
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 1.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 1.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 1.5
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 1.5
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 1.5
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 1.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 1.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 1.5
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 1.5
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 1.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 1.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 1.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 1.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 1.4
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 1.4
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 1.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 1.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 1.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1.3
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 1.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 1.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 1.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 1.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 1.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 1.3
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 1.3
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 1.3
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 1.2
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 1.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 1.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1.2
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 1.2
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 1.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 1.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 1.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 1.2
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 1.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 1.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 1.2
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 1.2
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 1.2
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 1.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 1.2
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 1.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 1.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 1.1
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 1.1
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 1.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 1.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 1.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 1.1
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 1.1
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 1.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 1.1
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 1.1
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 1.1
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 1.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 1.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 1.1
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 1.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 1.0
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 1.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 1.0
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 1.0
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 1.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 1.0
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 1.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 1.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 0.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 0.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 0.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 0.9
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 0.9
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 0.9
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 0.9
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 0.9
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 0.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 0.8
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 0.8
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 0.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 0.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 0.7
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 0.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 0.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 0.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 0.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 0.7
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 0.7
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 0.7
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 0.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 0.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 0.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 0.6
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 0.6
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 0.6
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 0.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 0.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 0.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 0.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 0.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 0.5
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 0.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 0.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 0.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 0.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 0.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 0.2
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 0.1
Show allShow less

PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

54.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 54.7
FF:10176-103C5 60 years, female 54.7

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.4
Pig sample Sample description nTPM
Putamen
nTPM: 45.4
Samples: 4

Max nTPM: 55.9
Min nTPM: 32.5
Sample A Female 32.5
Sample B Female 40.6
Sample C Male 55.9
Sample D Male 52.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo