We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PSME3IP1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PSME3IP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:67.2 nTPM
FANTOM5:66.0 Scaled Tags Per Million
Pig:41.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA054382
Glial cells Low
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 67.2
Samples: 246

Max nTPM: 109.2
Min nTPM: 48.9
Std nTPM: 9.2
Median nTPM: 65.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 109.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 105.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 101.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 95.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 91.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 89.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 87.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 87.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 85.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 85.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 85.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 85.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 84.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 83.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 83.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 83.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 82.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 81.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 81.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 80.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 80.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 80.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 79.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 79.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 79.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 78.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 78.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 78.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 78.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 78.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 77.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 77.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 77.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 76.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 76.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 76.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 76.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 76.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 76.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 76.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 75.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 75.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 74.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 74.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 74.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 73.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 73.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 73.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 73.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 73.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 73.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 73.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 73.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 72.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 72.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 72.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 72.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 72.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 72.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 71.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 71.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 71.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 71.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 70.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 70.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 70.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 70.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 70.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 70.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 70.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 70.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 70.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 70.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 70.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 70.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 70.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 70.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 70.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 70.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 70.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 69.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 69.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 69.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 69.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 68.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 68.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 68.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 68.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 68.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 68.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 68.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 68.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 68.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 67.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 67.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 67.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 67.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 67.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 67.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 67.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 67.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 67.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 66.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 66.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 66.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 66.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 66.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 66.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 66.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 66.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 66.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 66.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 66.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 66.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 66.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 66.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 66.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 66.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 65.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 65.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 65.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 65.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 65.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 65.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 65.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 65.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 65.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 65.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 65.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 65.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 65.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 65.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 65.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 65.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 65.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 65.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 64.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 64.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 64.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 64.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 64.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 64.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 64.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 64.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 64.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 64.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 64.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 64.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 64.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 63.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 63.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 63.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 63.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 63.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 63.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 63.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 63.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 62.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 62.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 62.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 62.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 62.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 62.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 62.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 62.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 62.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 62.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 62.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 62.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 62.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 62.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 62.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 62.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 62.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 62.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 61.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 61.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 61.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 61.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 61.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 61.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 61.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 61.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 61.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 61.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 61.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 61.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 60.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 60.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 60.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 60.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 60.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 60.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 60.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 60.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 60.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 60.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 60.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 60.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 60.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 60.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 59.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 59.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 59.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 59.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 59.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 59.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 59.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 59.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 59.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 59.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 59.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 59.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 59.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 58.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 58.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 58.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 58.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 58.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 58.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 58.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 58.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 57.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 57.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 56.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 56.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 56.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 55.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 55.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 55.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 55.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 54.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 54.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 54.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 54.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 53.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 53.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 53.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 52.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 52.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 52.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 52.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 51.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 51.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 51.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 48.9
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

66.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 66.0
FF:10164-103B2 76 years, female 66.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.4
Pig sample Sample description nTPM
Caudate
nTPM: 41.4
Samples: 4

Max nTPM: 46.1
Min nTPM: 38.6
Sample A Female 38.6
Sample B Female 41.4
Sample C Male 46.1
Sample D Male 39.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org