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  • CFL1
TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
Tissue methods
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Cells in glomeruli: Low
Cells in tubules: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:615.1 nTPM
HPA:300.7 nTPM
GTEx:615.1 nTPM
FANTOM5:1266.0 Scaled Tags Per Million
KIDNEY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA053761Antibody CAB033687Antibody CAB037077
Cells in glomeruli LowLowNot detected
Cells in tubules LowLowMedium






KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

300.7
overview
Female, age 58
Kidney sample 55
nTPM: 313.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 339.5
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 309.4
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 360.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 178.6
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 242.9
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 501.7
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 275.9
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 184.5
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

615.1
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 578.7
Samples: 104

Max nTPM: 954.4
Min nTPM: 337.3
Std nTPM: 136.6
Median nTPM: 564.1
GTEX-1O9I2-1926-SM-F2TBQ 50-59 years, male 954.4
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 918.1
GTEX-15DCD-1926-SM-HAV33 70-79 years, female 889.2
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 866.4
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 848.3
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 811.9
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 772.6
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 762.7
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 762.7
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 760.9
GTEX-QDVN-1726-SM-HL9TO 50-59 years, male 753.9
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 751.8
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 746.9
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 736.2
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 729.7
GTEX-12696-0926-SM-5FQTV 60-69 years, male 715.4
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 715.3
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 713.6
GTEX-1LH75-1326-SM-F2I1R 50-59 years, female 705.5
GTEX-O5YV-1226-SM-EV795 60-69 years, female 701.0
GTEX-1ICLY-2026-SM-GA913 50-59 years, male 695.4
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 689.6
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 687.5
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 686.5
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 683.1
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 677.0
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 671.2
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 670.0
GTEX-14C39-2126-SM-664OH 40-49 years, male 667.7
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 662.5
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 661.2
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 660.7
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 658.5
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 638.3
GTEX-16XZY-1026-SM-HAV39 70-79 years, male 638.2
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 637.5
GTEX-WL46-1926-SM-GNIN6 50-59 years, male 635.7
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 634.2
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 630.7
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 628.3
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 624.5
GTEX-16XZZ-2226-SM-HAV34 60-69 years, male 623.0
GTEX-1117F-2126-SM-GIN9G 60-69 years, female 615.6
GTEX-1RQEC-2426-SM-F2I1J 60-69 years, male 605.5
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 602.7
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 593.6
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 592.1
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 580.7
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 577.0
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 576.1
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 573.2
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 567.5
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 560.6
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 558.8
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 557.8
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 553.2
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 550.3
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 547.7
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 545.5
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 538.8
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 533.7
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 531.9
GTEX-13O3O-1726-SM-GJ3RL 60-69 years, female 530.5
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 526.8
GTEX-1JJE9-1026-SM-HL9TH 70-79 years, male 526.1
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 517.8
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 517.1
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 516.2
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 510.5
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 510.4
GTEX-14PJ2-1826-SM-HL9UB 50-59 years, male 507.6
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 507.6
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 491.2
GTEX-14JG1-2326-SM-HAUZ5 40-49 years, male 483.5
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 481.4
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 478.9
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 477.5
GTEX-1QAET-2126-SM-F2TBS 50-59 years, male 468.7
GTEX-ZXG5-2026-SM-HAUZV 60-69 years, male 467.5
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 454.4
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 454.1
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 448.5
GTEX-1HCVE-2126-SM-HL9UO 50-59 years, male 442.1
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 439.4
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 438.8
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 438.4
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 431.7
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 423.6
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 422.5
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 420.5
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 417.6
GTEX-NFK9-1826-SM-HL9T3 40-49 years, male 414.8
GTEX-W5X1-1626-SM-H7OGO 40-49 years, female 414.2
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 410.1
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 408.1
GTEX-13112-2126-SM-5GCO4 50-59 years, male 407.1
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 403.4
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 391.4
GTEX-13FHP-2126-SM-GIN8J 50-59 years, male 387.5
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 376.8
GTEX-16Z82-2826-SM-HAUZZ 60-69 years, male 361.4
GTEX-RN64-1626-SM-48FD7 50-59 years, male 345.9
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 340.1
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 337.3
Show allShow less
Kidney - Medulla
Average nTPM: 615.1
Samples: 11

Max nTPM: 914.4
Min nTPM: 422.7
Std nTPM: 172.3
Median nTPM: 537.3
GTEX-N7MS-1526-SM-HAUZP 60-69 years, male 914.4
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 809.0
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 808.0
GTEX-QEG5-2026-SM-H6Q6I 20-29 years, male 792.4
GTEX-P4QS-1226-SM-HPAG8 60-69 years, male 595.7
GTEX-S33H-1526-SM-GQ1CB 30-39 years, male 537.3
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 526.4
GTEX-SIU8-1926-SM-H7OG4 50-59 years, male 473.2
GTEX-T6MN-1926-SM-GOQYD 50-59 years, male 461.8
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 425.2
GTEX-QEG4-1526-SM-GPRWK 30-39 years, male 422.7
Show allShow less

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1266.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 1266.0
FF:10017-101C8 60,62,63 years, female 1266.0

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