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  • GNB2
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:164.1 nTPM
HPA Brain:157.1 nTPM
GTEx:164.1 nTPM
FANTOM5:78.3 Scaled Tags Per Million
Pig:79.1 nTPM
Mouse:400.4 nTPM
Allen mouse:14.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.1
Sample id Sample description nTPM
Amygdala
nTPM: 151.6
1987 Female, age 91, left hemisphere 162.0
2517 Female, age 94, left hemisphere 159.4
2814 Male, age 76, right hemisphere 151.1
2695 Female, age 67, right hemisphere 150.1
2514 Male, age 75, right hemisphere 135.2
Basal amygdala
nTPM: 134.2
2609 Male, age 75, right hemisphere 159.0
2685 Female, age 94, left hemisphere 141.7
1955 Male, age 76, both hemispheres 134.0
2110 Male, age 80, left hemisphere 131.8
2243 Female, age 91, right hemisphere 129.1
2827 Female, age 67, right hemisphere 109.3
Central amygdala
nTPM: 157.1
2826 Female, age 94, left hemisphere 195.5
2515 Male, age 75, right hemisphere 179.7
1905 Male, age 76, both hemispheres 154.0
2701 Female, age 91, right hemisphere 128.6
2239 Male, age 80, left hemisphere 127.5
Corticomedial amygdala
nTPM: 134.6
2428 Male, age 75, right hemisphere 165.1
2829 Male, age 80, left hemisphere 149.5
2242 Female, age 91, right hemisphere 136.1
2429 Female, age 94, left hemisphere 132.5
2535 Female, age 67, right hemisphere 117.1
2240 Male, age 76, both hemispheres 107.3
Lateral amygdala
nTPM: 137.2
2534 Female, age 94, left hemisphere 161.5
1883 Male, age 76, both hemispheres 144.7
2255 Female, age 91, right hemisphere 140.2
2516 Male, age 75, right hemisphere 138.8
2256 Male, age 80, left hemisphere 126.4
2830 Female, age 67, right hemisphere 111.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 164.1
Samples: 181

Max nTPM: 390.9
Min nTPM: 104.4
Std nTPM: 37.1
Median nTPM: 157.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 390.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 300.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 297.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 265.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 250.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 240.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 235.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 231.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 224.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 217.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 214.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 213.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 213.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 211.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 209.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 208.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 208.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 207.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 206.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 206.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 204.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 203.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 202.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 201.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 200.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 200.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 194.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 194.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 192.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 191.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 189.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 189.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 189.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 188.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 188.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 187.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 187.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 185.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 184.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 184.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 182.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 182.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 181.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 181.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 181.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 179.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 179.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 179.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 178.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 177.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 177.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 177.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 176.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 175.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 174.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 174.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 174.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 173.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 173.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 173.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 171.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 171.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 171.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 171.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 171.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 170.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 170.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 168.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 168.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 167.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 167.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 166.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 166.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 166.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 166.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 166.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 166.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 166.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 164.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 164.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 164.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 163.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 163.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 162.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 162.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 161.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 161.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 159.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 159.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 158.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 157.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 157.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 157.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 157.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 156.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 156.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 155.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 155.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 155.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 154.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 153.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 153.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 153.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 153.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 153.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 152.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 152.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 152.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 151.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 151.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 150.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 149.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 148.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 148.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 148.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 147.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 146.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 146.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 146.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 145.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 145.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 145.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 145.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 144.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 144.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 143.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 143.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 143.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 142.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 142.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 141.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 141.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 140.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 139.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 138.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 138.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 138.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 138.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 138.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 138.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 137.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 136.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 136.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 136.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 136.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 135.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 135.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 134.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 134.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 134.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 133.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 132.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 132.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 132.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 132.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 131.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 129.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 128.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 128.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 127.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 127.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 127.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 126.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 125.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 125.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 123.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 123.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 122.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 122.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 122.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 119.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 119.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 116.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 116.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 115.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 112.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 108.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 107.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 106.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 104.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 104.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

78.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 78.3
FF:10151-102I7 76 years, female 78.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.1
Pig sample Sample description nTPM
Amygdala
nTPM: 79.1
Samples: 4

Max nTPM: 106.9
Min nTPM: 67.7
Sample A Female 106.9
Sample B Female 67.7
Sample C Male 68.2
Sample D Male 73.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

400.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 400.5
Samples: 4

Max nTPM: 410.7
Min nTPM: 391.6
Sample A Male 401.5
Sample B Male 398.1
Sample C Female 391.6
Sample D Female 410.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.6
512 Antisense, RP_Baylor_102825, Mouse strain C57BL/6J (56 days, male) 14.6
513 Antisense, RP_Baylor_102825, Mouse strain C57BL/6J (56 days, male) 13.7

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