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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:511.2 nTPM
HPA Brain:551.2 nTPM
GTEx:511.2 nTPM
FANTOM5:337.1 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:586.6 nTPM
Allen mouse:15.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

551.2
Sample id Sample description nTPM
Amygdala
nTPM: 493.1
2695 Female, age 67, right hemisphere 684.8
2814 Male, age 76, right hemisphere 542.2
2517 Female, age 94, left hemisphere 450.8
2514 Male, age 75, right hemisphere 409.5
1987 Female, age 91, left hemisphere 378.4
Basal amygdala
nTPM: 471.4
2827 Female, age 67, right hemisphere 523.5
2609 Male, age 75, right hemisphere 512.1
2243 Female, age 91, right hemisphere 510.4
2110 Male, age 80, left hemisphere 478.0
1955 Male, age 76, both hemispheres 425.3
2685 Female, age 94, left hemisphere 378.9
Central amygdala
nTPM: 494.9
2826 Female, age 94, left hemisphere 645.5
1905 Male, age 76, both hemispheres 538.1
2515 Male, age 75, right hemisphere 462.0
2239 Male, age 80, left hemisphere 453.2
2701 Female, age 91, right hemisphere 375.7
Corticomedial amygdala
nTPM: 417.6
2829 Male, age 80, left hemisphere 480.4
2428 Male, age 75, right hemisphere 465.1
2535 Female, age 67, right hemisphere 414.7
2242 Female, age 91, right hemisphere 400.1
2429 Female, age 94, left hemisphere 376.5
2240 Male, age 76, both hemispheres 368.9
Lateral amygdala
nTPM: 551.2
2830 Female, age 67, right hemisphere 752.4
2534 Female, age 94, left hemisphere 652.3
2516 Male, age 75, right hemisphere 564.9
1883 Male, age 76, both hemispheres 482.0
2255 Female, age 91, right hemisphere 468.1
2256 Male, age 80, left hemisphere 387.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

511.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 511.2
Samples: 181

Max nTPM: 1284.2
Min nTPM: 216.6
Std nTPM: 170.8
Median nTPM: 474.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1284.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1145.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1054.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1027.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 938.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 930.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 928.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 899.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 890.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 867.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 840.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 778.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 729.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 722.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 714.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 703.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 698.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 698.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 694.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 693.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 680.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 672.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 665.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 665.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 664.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 662.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 660.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 655.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 645.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 644.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 644.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 642.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 641.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 638.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 637.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 632.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 628.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 625.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 622.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 622.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 620.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 617.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 611.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 608.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 605.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 605.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 604.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 601.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 599.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 598.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 598.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 597.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 596.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 594.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 589.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 582.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 575.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 567.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 565.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 562.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 556.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 550.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 550.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 550.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 549.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 546.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 540.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 537.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 535.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 528.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 526.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 526.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 512.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 512.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 509.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 508.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 505.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 504.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 503.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 499.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 494.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 492.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 490.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 489.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 487.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 478.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 477.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 477.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 475.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 475.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 474.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 470.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 470.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 469.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 469.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 467.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 465.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 457.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 456.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 453.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 446.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 445.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 443.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 443.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 443.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 441.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 438.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 438.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 437.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 436.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 434.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 434.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 433.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 432.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 427.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 424.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 424.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 423.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 423.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 423.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 421.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 421.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 419.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 415.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 413.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 412.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 410.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 407.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 405.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 395.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 395.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 394.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 393.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 391.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 390.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 390.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 387.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 387.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 385.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 385.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 382.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 382.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 381.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 377.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 376.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 370.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 366.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 366.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 365.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 364.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 361.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 358.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 356.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 356.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 356.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 353.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 350.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 346.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 340.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 338.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 336.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 336.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 334.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 333.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 332.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 331.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 323.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 320.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 316.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 315.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 314.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 313.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 312.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 311.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 308.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 287.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 281.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 270.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 267.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 257.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 216.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

337.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 337.1
FF:10151-102I7 76 years, female 337.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.9
Pig sample Sample description nTPM
Amygdala
nTPM: 29.0
Samples: 4

Max nTPM: 39.4
Min nTPM: 24.4
Sample A Female 39.4
Sample B Female 24.4
Sample C Male 26.3
Sample D Male 25.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

586.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 586.6
Samples: 4

Max nTPM: 640.9
Min nTPM: 533.5
Sample A Male 570.4
Sample B Male 533.5
Sample C Female 640.9
Sample D Female 601.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.0
167 Antisense, RP_Baylor_102648, Mouse strain C57BL/6J (56 days, male) 15.0
166 Antisense, RP_Baylor_102648, Mouse strain C57BL/6J (56 days, male) 14.0

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