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  • TBCA
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:180.2 nTPM
HPA Brain:75.7 nTPM
GTEx:180.2 nTPM
FANTOM5:180.8 Scaled Tags Per Million
Pig:30.3 nTPM
Mouse:201.6 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.7
Sample id Sample description nTPM
Amygdala
nTPM: 75.7
2514 Male, age 75, right hemisphere 84.5
2814 Male, age 76, right hemisphere 82.3
1987 Female, age 91, left hemisphere 74.1
2695 Female, age 67, right hemisphere 71.5
2517 Female, age 94, left hemisphere 66.1
Basal amygdala
nTPM: 69.3
2243 Female, age 91, right hemisphere 79.6
1955 Male, age 76, both hemispheres 75.1
2609 Male, age 75, right hemisphere 73.2
2110 Male, age 80, left hemisphere 70.5
2685 Female, age 94, left hemisphere 61.1
2827 Female, age 67, right hemisphere 56.2
Central amygdala
nTPM: 75.4
1905 Male, age 76, both hemispheres 80.8
2239 Male, age 80, left hemisphere 80.1
2701 Female, age 91, right hemisphere 77.9
2826 Female, age 94, left hemisphere 73.9
2515 Male, age 75, right hemisphere 64.3
Corticomedial amygdala
nTPM: 75.5
2242 Female, age 91, right hemisphere 85.3
2829 Male, age 80, left hemisphere 83.3
2429 Female, age 94, left hemisphere 76.1
2240 Male, age 76, both hemispheres 75.1
2428 Male, age 75, right hemisphere 67.2
2535 Female, age 67, right hemisphere 66.2
Lateral amygdala
nTPM: 64.0
1883 Male, age 76, both hemispheres 77.4
2516 Male, age 75, right hemisphere 74.3
2534 Female, age 94, left hemisphere 59.8
2255 Female, age 91, right hemisphere 59.6
2256 Male, age 80, left hemisphere 58.3
2830 Female, age 67, right hemisphere 54.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 180.2
Samples: 181

Max nTPM: 468.8
Min nTPM: 112.7
Std nTPM: 48.4
Median nTPM: 169.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 468.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 375.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 369.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 357.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 320.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 311.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 294.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 293.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 290.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 282.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 246.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 240.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 236.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 236.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 236.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 231.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 230.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 227.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 222.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 219.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 218.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 218.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 217.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 216.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 216.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 216.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 215.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 212.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 211.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 208.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 207.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 204.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 201.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 200.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 198.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 198.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 197.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 197.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 197.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 197.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 196.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 195.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 195.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 195.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 193.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 193.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 192.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 192.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 192.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 192.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 191.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 190.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 189.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 188.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 188.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 187.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 187.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 186.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 186.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 186.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 185.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 185.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 184.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 184.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 183.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 183.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 181.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 181.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 180.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 180.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 180.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 179.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 178.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 177.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 176.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 175.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 175.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 175.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 175.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 173.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 173.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 173.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 172.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 172.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 172.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 172.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 172.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 171.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 170.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 170.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 169.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 169.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 168.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 167.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 167.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 166.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 166.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 165.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 165.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 165.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 165.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 164.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 164.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 163.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 163.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 163.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 163.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 163.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 162.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 161.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 161.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 160.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 160.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 160.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 160.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 160.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 160.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 159.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 159.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 159.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 159.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 159.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 159.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 159.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 158.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 158.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 157.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 157.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 155.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 155.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 155.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 155.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 155.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 154.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 154.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 154.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 154.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 152.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 151.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 151.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 150.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 150.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 149.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 149.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 147.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 147.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 147.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 147.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 146.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 146.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 146.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 146.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 145.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 144.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 144.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 144.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 142.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 141.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 141.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 140.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 139.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 138.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 137.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 134.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 134.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 133.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 133.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 133.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 130.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 129.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 129.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 127.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 127.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 127.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 125.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 125.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 117.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 117.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 116.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 112.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 112.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

180.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 180.8
FF:10151-102I7 76 years, female 180.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.3
Pig sample Sample description nTPM
Amygdala
nTPM: 30.3
Samples: 4

Max nTPM: 40.0
Min nTPM: 25.1
Sample A Female 40.0
Sample B Female 26.2
Sample C Male 29.7
Sample D Male 25.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 201.6
Samples: 4

Max nTPM: 212.4
Min nTPM: 192.0
Sample A Male 209.6
Sample B Male 212.4
Sample C Female 192.0
Sample D Female 192.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.5
68861975 Antisense, RP_050301_01_C05, Mouse strain C57BL/6J (56 days, male) 1.5

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