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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:12358.9 nTPM
GTEx:12358.9 nTPM
FANTOM5:260.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA030877Antibody CAB000133
Squamous epithelial cells HighMedium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12358.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 12358.9
Samples: 170

Max nTPM: 52791.3
Min nTPM: 0.5
Std nTPM: 12808.0
Median nTPM: 9682.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 52791.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 48715.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 46444.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 45770.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 43974.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 43924.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 43299.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 41581.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 38312.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 38065.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 37394.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 35748.6
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 35166.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 33524.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 32804.7
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 32166.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 30842.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 28950.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 28356.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 28349.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 28304.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 28250.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 27533.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 27156.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 25994.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 25980.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 25955.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 25555.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 25489.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 25391.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 24727.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 23793.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 23701.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 23643.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 23493.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 23428.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 23217.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 23175.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 22200.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 19948.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 19805.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 19344.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 19341.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 19061.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 18927.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 18892.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 18384.9
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 18179.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 17993.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 17556.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 17128.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 16934.2
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 16732.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 16724.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 16674.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 16235.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 15925.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 15284.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 14823.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 14776.3
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 14737.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 14542.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 14325.3
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 14259.9
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 14198.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 14138.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 14115.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 13868.4
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 13436.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 13346.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 13139.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 12424.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 12209.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 11969.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 11940.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 11752.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 11678.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 11531.7
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 11009.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 10789.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 10152.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 10059.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 10020.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 9933.2
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 9799.2
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 9565.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 9453.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 9354.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 8325.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 8094.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 7916.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 7227.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 6965.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 6963.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 6889.1
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 6687.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 6599.2
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 6126.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 6017.2
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 5206.8
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 4945.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 4782.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 4602.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 4298.5
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 4124.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 3990.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 3949.0
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 3715.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 3545.3
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 2528.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2412.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 2361.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2274.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1807.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1542.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1486.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1424.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1269.1
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1226.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1117.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1110.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1002.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 969.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 963.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 924.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 904.5
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 643.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 623.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 539.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 437.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 434.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 385.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 261.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 219.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 214.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 207.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 185.0
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 161.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 153.8
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 130.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 101.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 62.9
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 59.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 32.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 29.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 26.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 24.6
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 22.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 18.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 18.0
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 14.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 12.6
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 11.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 11.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 11.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 11.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 9.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 9.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 7.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 4.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 4.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 3.9
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 1.9
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1.4
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 0.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

260.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 260.2
FF:10204-103F6 68 years, female 260.2

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