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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
36.3
nTPM
HPA Brain:
56.1
nTPM
GTEx:
36.3
nTPM
FANTOM5:
128.7
Scaled Tags Per Million
Pig:
64.2
nTPM
Mouse:
79.9
nTPM
Allen mouse:
9.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA010926
Antibody CAB002148
Glial cells
Low
Not detected
Neuronal cells
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 41.9
1911
Female, age 85, right hemisphere
49.6
1898
Male, age 80, left hemisphere
48.1
2529
Female, age 94, left hemisphere
43.8
2621
Female, age 67, right hemisphere
42.2
1855
Male, age 76, left hemisphere
35.1
2148
Female, age 91, left hemisphere
32.5
Dentate gyrus nTPM: 38.7
2530
Female, age 94, left hemisphere
50.0
2528
Male, age 74, both hemispheres
43.5
2246
Female, age 85, both hemispheres
38.5
2010
Male, age 76, both hemispheres
36.0
1927
Female, age 91, both hemispheres
35.0
2531
Female, age 67, both hemispheres
29.1
Entorhinal gyrus nTPM: 54.2
2117
Female, age 91, right hemisphere
63.1
1938
Female, age 85, left hemisphere
62.9
2613
Female, age 94, left hemisphere
61.1
1787
Male, age 76, left hemisphere
55.3
2764
Male, age 80, right hemisphere
49.0
2686
Male, age 75, right hemisphere
34.0
Hippocampus, CA1 nTPM: 36.4
2527
Male, age 74, both hemispheres
46.4
2082
Female, age 91, right hemisphere
36.4
1873
Female, age 85, both hemispheres
36.3
2045
Male, age 76, both hemispheres
33.8
2749
Male, age 80, left hemisphere
29.1
Hippocampus, CA2 nTPM: 46.6
1940
Female, age 85, left hemisphere
56.5
2249
Male, age 74, both hemispheres
55.1
2437
Female, age 94, left hemisphere
46.3
1963
Male, age 80, left hemisphere
42.0
2113
Female, age 91, right hemisphere
39.9
1892
Male, age 76, both hemispheres
39.7
Hippocampus, CA3 nTPM: 36.1
1891
Female, age 85, both hemispheres
61.3
1867
Male, age 76, both hemispheres
48.6
2436
Male, age 74, both hemispheres
41.4
2137
Male, age 80, left hemisphere
25.7
2620
Female, age 94, left hemisphere
21.2
2861
Female, age 67, both hemispheres
18.2
Parahippocampal cortex nTPM: 45.1
1990
Female, age 91, right hemisphere
58.0
2692
Male, age 74, both hemispheres
50.8
2250
Female, age 67, right hemisphere
50.6
1933
Female, age 85, both hemispheres
50.1
1850
Male, age 80, both hemispheres
48.9
2532
Female, age 72, left hemisphere
44.1
2018
Male, age 76, both hemispheres
42.8
2693
Female, age 94, both hemispheres
40.9
2245
Female, age 91, both hemispheres
38.9
2622
Female, age 67, right hemisphere
25.9
Perirhinal gyrus nTPM: 45.1
1847
Female, age 91, left hemisphere
50.1
2848
Male, age 76, right hemisphere
46.4
2521
Female, age 94, right hemisphere
46.0
1794
Male, age 80, right hemisphere
42.8
1841
Female, age 85, right hemisphere
40.2
Subiculum nTPM: 56.1
1901
Male, age 80, both hemispheres
63.7
2042
Male, age 76, both hemispheres
63.5
1977
Female, age 85, both hemispheres
62.2
2438
Female, age 94, left hemisphere
61.6
2619
Male, age 74, both hemispheres
46.4
2729
Female, age 91, right hemisphere
39.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
36.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 36.3
Samples: 197
Max nTPM: 88.2
Min nTPM: 14.0
Std nTPM: 13.8
Median nTPM: 32.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
88.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
81.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
75.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
72.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
71.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
68.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
67.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
67.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
67.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
66.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
65.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
64.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
63.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
63.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
61.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
59.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
57.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
55.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
55.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
55.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
54.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
54.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
53.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
53.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
53.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
53.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
53.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
52.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
52.6
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
52.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
50.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
50.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
49.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
49.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
48.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
47.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
47.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
47.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
46.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
45.8
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
45.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
45.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
45.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
44.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
44.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
44.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
44.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
43.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
43.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
43.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
43.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
42.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
42.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
42.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
42.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
41.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
41.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
41.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
41.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
41.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
40.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
40.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
40.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
40.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
39.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
39.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
38.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
38.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
38.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
38.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
37.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
37.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
37.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
37.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
36.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
36.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
36.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
36.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
36.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
35.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
35.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
35.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
35.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
35.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
35.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
35.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
34.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
34.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
34.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
34.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
34.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
34.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
34.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
34.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
33.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
33.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
33.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
32.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
32.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
32.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
32.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
32.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
32.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
32.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
32.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
32.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
31.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
31.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
31.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
31.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
31.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
30.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
30.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
30.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
30.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
30.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
30.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
30.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
29.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
29.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
29.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
29.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
29.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
29.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
28.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
28.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
28.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
28.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
28.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
28.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
27.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
27.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
27.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
27.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
26.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
26.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
26.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
26.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
26.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
26.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
26.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
26.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
26.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
26.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
26.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
25.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
25.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
25.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
25.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
25.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
25.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
24.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
24.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
24.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
24.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
24.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
24.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
24.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
24.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
24.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
24.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
24.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
23.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
23.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
23.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
23.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
23.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
23.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
23.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
23.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
22.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
22.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
22.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
22.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
22.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
22.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
22.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
22.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
21.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
21.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
21.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
21.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
21.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
21.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
21.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
21.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
20.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
20.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
20.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
19.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
19.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
19.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
19.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
17.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
17.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
16.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
14.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 79.9
Samples: 4
Max nTPM: 99.5
Min nTPM: 67.6
Sample A
Male
67.6
Sample B
Male
78.3
Sample C
Female
74.3
Sample D
Female
99.5
Hippocampal formation nTPM: 47.1
Samples: 4
Max nTPM: 53.3
Min nTPM: 39.7
Sample A
Male
50.5
Sample B
Male
53.3
Sample C
Female
39.7
Sample D
Female
44.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.