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  • TISSUE

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  • NPIPB3
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:74.7 nTPM
HPA Brain:234.7 nTPM
GTEx:74.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

234.7
Sample id Sample description nTPM
Amygdala
nTPM: 128.9
2517 Female, age 94, left hemisphere 158.2
2695 Female, age 67, right hemisphere 136.5
2514 Male, age 75, right hemisphere 122.1
2814 Male, age 76, right hemisphere 120.0
1987 Female, age 91, left hemisphere 107.9
Basal amygdala
nTPM: 227.0
2827 Female, age 67, right hemisphere 380.2
2243 Female, age 91, right hemisphere 258.3
2685 Female, age 94, left hemisphere 226.7
2609 Male, age 75, right hemisphere 181.8
1955 Male, age 76, both hemispheres 175.8
2110 Male, age 80, left hemisphere 139.3
Central amygdala
nTPM: 200.9
2826 Female, age 94, left hemisphere 279.5
2701 Female, age 91, right hemisphere 247.5
2239 Male, age 80, left hemisphere 207.9
1905 Male, age 76, both hemispheres 140.4
2515 Male, age 75, right hemisphere 129.2
Corticomedial amygdala
nTPM: 222.3
2535 Female, age 67, right hemisphere 384.9
2242 Female, age 91, right hemisphere 253.1
2240 Male, age 76, both hemispheres 223.5
2429 Female, age 94, left hemisphere 183.4
2829 Male, age 80, left hemisphere 166.5
2428 Male, age 75, right hemisphere 122.2
Lateral amygdala
nTPM: 234.7
2830 Female, age 67, right hemisphere 407.1
2255 Female, age 91, right hemisphere 272.2
2256 Male, age 80, left hemisphere 250.9
2534 Female, age 94, left hemisphere 227.3
2516 Male, age 75, right hemisphere 150.6
1883 Male, age 76, both hemispheres 100.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 74.7
Samples: 181

Max nTPM: 280.5
Min nTPM: 4.3
Std nTPM: 39.3
Median nTPM: 65.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 280.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 200.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 180.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 177.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 174.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 165.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 165.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 159.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 148.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 146.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 140.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 138.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 137.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 135.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 135.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 130.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 128.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 127.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 127.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 127.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 125.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 122.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 120.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 118.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 117.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 115.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 114.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 113.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 109.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 108.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 108.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 107.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 106.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 106.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 105.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 103.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 101.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 101.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 100.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 100.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 98.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 98.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 98.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 97.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 95.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 93.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 91.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 90.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 90.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 90.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 90.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 90.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 89.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 89.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 88.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 86.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 85.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 84.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 83.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 83.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 82.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 81.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 81.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 80.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 80.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 80.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 79.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 77.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 77.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 77.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 75.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 74.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 74.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 73.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 73.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 73.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 72.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 71.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 70.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 70.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 70.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 69.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 69.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 69.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 68.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 68.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 67.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 67.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 66.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 66.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 65.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 65.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 63.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 62.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 62.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 62.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 61.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 61.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 61.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 60.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 59.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 58.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 57.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 56.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 56.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 56.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 55.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 55.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 55.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 54.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 54.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 54.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 54.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 54.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 53.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 53.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 52.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 52.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 52.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 52.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 52.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 52.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 51.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 51.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 51.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 51.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 50.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 50.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 49.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 48.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 48.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 47.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 47.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 47.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 47.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 47.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 47.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 47.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 46.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 46.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 45.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 45.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 44.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 44.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 44.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 44.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 43.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 43.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 42.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 42.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 41.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 41.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 41.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 40.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 40.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 40.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 40.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 40.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 40.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 39.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 39.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 38.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 38.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 38.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 37.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 34.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 33.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 33.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 33.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 33.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 30.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 29.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 29.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 27.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 27.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 27.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 22.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 18.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 14.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 10.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 4.3
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