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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.4
nTPM
Monaco:
21.6
nTPM
Schmiedel:
7.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.4
HPA sample
nTPM
gdT-cell nTPM: 8.5
Samples: 6
Max nTPM: 10.7
Min nTPM: 6.1
P10809_1007
10.6
P10809_1022
7.9
P10809_1041
8.1
P10809_1060
7.5
P10809_1077
6.1
P10809_1098
10.7
MAIT T-cell nTPM: 10.4
Samples: 6
Max nTPM: 16.7
Min nTPM: 6.7
P10809_1006
9.5
P10809_1024
10.1
P10809_1043
8.3
P10809_1062
16.7
P10809_1083
6.7
P10809_1097
11.3
Memory CD4 T-cell nTPM: 10.8
Samples: 6
Max nTPM: 13.9
Min nTPM: 7.7
P10809_1014
11.4
P10809_1026
13.9
P10809_1045
12.8
P10809_1064
9.6
P10809_1086
7.7
P10809_1113
9.4
Memory CD8 T-cell nTPM: 10.7
Samples: 5
Max nTPM: 17.3
Min nTPM: 6.8
P10809_1012
8.6
P10809_1027
6.8
P10809_1046
17.3
P10809_1065
11.7
P10809_1111
9.3
Naive CD4 T-cell nTPM: 11.0
Samples: 6
Max nTPM: 18.8
Min nTPM: 7.3
P10809_1015
10.4
P10809_1030
7.3
P10809_1049
18.8
P10809_1068
10.4
P10809_1085
8.8
P10809_1112
10.2
Naive CD8 T-cell nTPM: 8.1
Samples: 6
Max nTPM: 10.5
Min nTPM: 4.5
P10809_1016
8.8
P10809_1031
10.5
P10809_1050
8.5
P10809_1069
8.9
P10809_1087
4.5
P10809_1110
7.5
T-reg nTPM: 11.4
Samples: 6
Max nTPM: 19.9
Min nTPM: 8.3
P10809_1018
8.3
P10809_1037
11.1
P10809_1056
19.9
P10809_1075
9.5
P10809_1094
10.9
P10809_1106
8.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 14.5
Samples: 4
Max nTPM: 28.0
Min nTPM: 6.8
RHH5202_R3573
6.8
RHH5230_R3602
28.0
RHH5259_R3631
10.7
RHH5288_R3660
12.3
Effector memory CD8 T-cell nTPM: 16.8
Samples: 4
Max nTPM: 23.6
Min nTPM: 13.6
RHH5203_R3574
13.6
RHH5231_R3603
15.6
RHH5260_R3632
23.6
RHH5289_R3661
14.3
MAIT T-cell nTPM: 20.0
Samples: 4
Max nTPM: 28.6
Min nTPM: 10.9
RHH5233_R3605
10.9
RHH5205_R3576
15.3
RHH5262_R3634
28.6
RHH5297_R3663
25.3
Memory CD4 T-cell TFH nTPM: 19.7
Samples: 4
Max nTPM: 27.4
Min nTPM: 6.8
RHH5300_R3666
19.8
RHH5236_R3608
27.4
RHH5265_R3637
24.8
RHH5208_R3579
6.8
Memory CD4 T-cell Th1 nTPM: 18.7
Samples: 4
Max nTPM: 21.4
Min nTPM: 14.2
RHH5210_R3581
17.6
RHH5302_R3668
21.4
RHH5238_R3610
14.2
RHH5267_R3639
21.4
Memory CD4 T-cell Th1/Th17 nTPM: 17.6
Samples: 4
Max nTPM: 25.5
Min nTPM: 12.0
RHH5303_R3669
12.0
RHH5211_R3582
19.8
RHH5239_R3611
13.0
RHH5268_R3640
25.5
Memory CD4 T-cell Th17 nTPM: 20.6
Samples: 4
Max nTPM: 26.3
Min nTPM: 13.9
RHH5304_R3670
17.2
RHH5212_R3583
26.3
RHH5240_R3612
13.9
RHH5269_R3641
24.8
Memory CD4 T-cell Th2 nTPM: 17.1
Samples: 4
Max nTPM: 21.3
Min nTPM: 14.0
RHH5305_R3671
15.8
RHH5213_R3584
14.0
RHH5241_R3613
17.4
RHH5270_R3642
21.3
Naive CD4 T-cell nTPM: 21.6
Samples: 4
Max nTPM: 24.3
Min nTPM: 19.1
RHH5306_R3672
24.3
RHH5214_R3585
19.1
RHH5242_R3614
23.3
RHH5271_R3643
19.8
Naive CD8 T-cell nTPM: 11.8
Samples: 4
Max nTPM: 19.9
Min nTPM: 8.2
RHH5201_R3572
9.9
RHH5229_R3601
8.2
RHH5258_R3630
19.9
RHH5287_R3659
9.0
Non-Vd2 gdTCR nTPM: 16.0
Samples: 4
Max nTPM: 19.5
Min nTPM: 12.2
RHH5235_R3607
19.5
RHH5264_R3636
12.2
RHH5207_R3578
13.5
RHH5299_R3665
18.7
T-reg nTPM: 13.9
Samples: 4
Max nTPM: 16.0
Min nTPM: 9.9
RHH5301_R3667
15.6
RHH5237_R3609
14.1
RHH5266_R3638
9.9
RHH5209_R3580
16.0
Terminal effector memory CD4 T-cell nTPM: 19.8
Samples: 2
Max nTPM: 20.9
Min nTPM: 18.6
RHH5243_R3615
20.9
RHH5272_R3644
18.6
Terminal effector memory CD8 T-cell nTPM: 18.0
Samples: 4
Max nTPM: 31.4
Min nTPM: 8.7
RHH5232_R3604
12.3
RHH5204_R3575
19.4
RHH5261_R3633
31.4
RHH5296_R3662
8.7
Vd2 gdTCR nTPM: 19.9
Samples: 4
Max nTPM: 22.4
Min nTPM: 17.2
RHH5234_R3606
22.4
RHH5206_R3577
17.2
RHH5263_R3635
19.9
RHH5298_R3664
20.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
