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  • SUMMARY

  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:849.3 nTPM
FANTOM5:886.9 Scaled Tags Per Million
Pig:160.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006361Antibody CAB002572
Glial cells Not detectedNot detected
Neuronal cells LowNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

849.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 849.3
Samples: 300

Max nTPM: 3374.9
Min nTPM: 306.0
Std nTPM: 408.3
Median nTPM: 731.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 3374.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 2742.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 2336.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 2231.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2023.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1956.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1941.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1929.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 1809.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1805.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1800.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1714.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1701.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1673.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1640.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1614.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1589.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1567.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1506.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1500.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1486.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1480.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1472.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1447.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1445.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1430.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1399.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1392.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1391.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1379.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1374.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1372.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1363.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1354.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1336.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1331.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1323.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1321.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1310.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1243.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1239.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1238.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1229.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1222.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1207.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1202.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1197.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1194.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1188.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1174.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1168.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1163.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1162.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1153.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1140.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1139.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1128.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1128.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1111.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1106.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1103.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1097.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1096.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1095.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1092.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1089.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1084.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1081.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1079.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1074.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1040.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1036.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 1030.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1026.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 1023.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1020.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1015.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1003.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1003.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 988.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 987.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 986.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 980.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 976.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 969.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 969.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 962.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 957.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 945.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 942.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 935.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 932.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 928.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 922.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 919.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 915.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 914.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 911.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 908.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 899.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 895.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 892.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 889.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 889.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 888.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 885.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 884.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 883.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 868.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 862.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 855.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 853.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 853.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 853.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 851.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 846.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 846.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 843.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 837.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 830.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 827.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 820.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 820.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 811.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 810.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 808.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 806.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 800.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 795.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 794.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 783.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 773.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 767.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 765.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 762.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 757.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 754.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 751.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 746.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 745.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 739.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 738.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 737.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 737.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 737.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 733.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 733.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 732.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 732.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 731.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 730.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 729.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 729.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 726.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 724.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 721.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 719.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 719.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 717.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 708.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 707.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 707.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 705.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 702.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 701.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 701.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 700.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 699.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 698.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 694.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 693.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 688.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 688.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 688.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 687.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 685.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 685.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 679.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 677.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 676.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 674.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 674.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 671.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 671.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 670.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 665.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 663.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 662.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 660.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 659.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 658.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 651.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 648.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 647.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 644.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 641.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 637.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 635.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 634.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 627.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 627.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 626.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 623.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 617.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 617.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 617.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 617.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 617.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 611.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 608.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 606.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 597.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 595.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 595.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 593.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 591.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 584.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 582.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 582.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 574.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 573.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 572.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 570.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 570.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 563.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 563.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 560.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 558.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 556.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 556.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 553.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 553.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 552.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 551.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 549.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 549.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 543.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 538.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 538.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 538.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 537.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 537.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 536.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 535.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 529.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 528.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 523.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 521.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 515.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 515.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 512.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 510.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 510.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 500.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 499.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 499.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 492.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 488.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 488.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 487.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 485.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 484.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 484.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 483.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 483.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 478.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 475.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 474.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 474.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 473.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 467.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 467.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 466.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 465.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 465.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 465.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 458.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 449.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 449.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 445.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 444.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 442.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 440.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 437.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 434.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 427.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 408.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 407.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 400.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 394.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 391.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 390.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 379.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 374.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 372.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 365.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 340.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 332.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 321.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 306.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

886.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 886.9
FF:10164-103B2 76 years, female 886.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.6
Pig sample Sample description nTPM
Caudate
nTPM: 160.6
Samples: 4

Max nTPM: 181.6
Min nTPM: 150.9
Sample A Female 153.2
Sample B Female 150.9
Sample C Male 156.6
Sample D Male 181.6

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