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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:838.4 nTPM
HPA Brain:363.3 nTPM
GTEx:838.4 nTPM
FANTOM5:834.8 Scaled Tags Per Million
Pig:163.4 nTPM
Mouse:229.4 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

363.3
Sample id Sample description nTPM
Amygdala
nTPM: 363.3
2514 Male, age 75, right hemisphere 542.5
2695 Female, age 67, right hemisphere 478.1
2814 Male, age 76, right hemisphere 348.3
1987 Female, age 91, left hemisphere 254.5
2517 Female, age 94, left hemisphere 193.2
Basal amygdala
nTPM: 194.1
1955 Male, age 76, both hemispheres 274.3
2609 Male, age 75, right hemisphere 240.0
2110 Male, age 80, left hemisphere 216.8
2827 Female, age 67, right hemisphere 177.1
2685 Female, age 94, left hemisphere 128.3
2243 Female, age 91, right hemisphere 128.0
Central amygdala
nTPM: 256.5
2515 Male, age 75, right hemisphere 343.5
2826 Female, age 94, left hemisphere 299.2
1905 Male, age 76, both hemispheres 293.7
2701 Female, age 91, right hemisphere 178.7
2239 Male, age 80, left hemisphere 167.3
Corticomedial amygdala
nTPM: 221.7
2428 Male, age 75, right hemisphere 390.9
2240 Male, age 76, both hemispheres 286.8
2242 Female, age 91, right hemisphere 191.1
2429 Female, age 94, left hemisphere 189.6
2829 Male, age 80, left hemisphere 139.2
2535 Female, age 67, right hemisphere 132.7
Lateral amygdala
nTPM: 253.9
2830 Female, age 67, right hemisphere 305.4
1883 Male, age 76, both hemispheres 298.6
2516 Male, age 75, right hemisphere 289.2
2534 Female, age 94, left hemisphere 274.7
2256 Male, age 80, left hemisphere 218.3
2255 Female, age 91, right hemisphere 137.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

838.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 838.4
Samples: 181

Max nTPM: 4019.9
Min nTPM: 280.7
Std nTPM: 390.2
Median nTPM: 743.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 4019.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2067.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2039.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1782.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1730.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1716.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1636.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1572.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1519.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1500.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1398.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1344.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1305.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1253.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1239.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1238.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1232.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1230.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1226.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1206.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1203.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1187.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1184.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1181.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1156.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1154.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1147.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1143.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1138.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1136.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1111.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1085.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1076.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1059.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1049.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1048.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1047.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1038.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1033.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1027.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 995.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 986.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 985.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 982.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 969.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 956.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 956.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 942.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 927.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 926.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 926.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 925.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 917.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 916.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 915.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 903.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 903.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 897.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 894.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 890.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 887.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 884.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 878.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 876.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 861.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 858.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 855.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 848.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 842.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 840.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 828.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 825.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 817.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 796.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 788.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 786.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 784.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 783.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 782.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 778.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 778.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 774.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 769.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 766.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 765.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 754.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 750.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 750.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 745.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 743.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 743.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 741.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 738.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 735.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 731.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 729.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 728.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 726.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 720.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 717.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 714.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 711.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 706.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 705.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 705.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 705.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 704.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 699.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 697.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 689.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 685.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 683.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 674.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 673.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 673.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 673.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 673.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 663.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 662.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 656.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 649.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 649.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 644.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 643.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 641.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 641.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 639.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 629.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 628.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 626.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 625.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 622.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 622.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 619.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 618.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 616.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 616.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 615.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 607.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 605.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 604.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 604.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 602.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 590.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 589.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 585.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 574.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 560.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 559.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 559.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 557.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 551.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 546.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 543.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 535.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 535.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 530.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 528.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 526.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 517.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 515.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 515.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 514.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 506.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 501.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 499.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 488.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 488.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 486.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 479.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 475.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 472.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 471.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 456.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 456.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 431.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 425.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 375.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 339.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 337.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 280.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

834.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 834.8
FF:10151-102I7 76 years, female 834.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.4
Pig sample Sample description nTPM
Amygdala
nTPM: 163.4
Samples: 4

Max nTPM: 202.2
Min nTPM: 109.4
Sample A Female 202.2
Sample B Female 189.2
Sample C Male 152.8
Sample D Male 109.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 229.5
Samples: 4

Max nTPM: 269.7
Min nTPM: 193.4
Sample A Male 193.4
Sample B Male 204.9
Sample C Female 269.7
Sample D Female 249.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.4
70305443 Antisense, RP_050609_04_B12, Mouse strain C57BL/6J (56 days, male) 1.4
71924291 Antisense, RP_050609_04_B12, Mouse strain C57BL/6J (56 days, male) 0.2

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