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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:143.4 nTPM
GTEx:143.4 nTPM
FANTOM5:68.8 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 143.4
Samples: 105

Max nTPM: 228.3
Min nTPM: 77.6
Std nTPM: 33.8
Median nTPM:
490_1 67 years, female 228.3
491_1 89 years, female 226.6
413_1 59 years, female 222.3
149_1 88 years, male 219.5
415_1 77 years, female 218.0
414_1 84 years, female 213.0
162_1 79 years, female 212.4
43_1 64 years, female 210.8
315_1 62 years, female 194.5
32_1 67 years, male 191.2
2_1 77 years, female 187.5
324_1 76 years, male 185.2
217_1 76 years, male 184.8
466_1 57 years, female 184.0
89_1 63 years, male 182.5
139_1 64 years, female 178.8
126_1 63 years, male 177.5
153_1 70 years, female 176.3
307_1 66 years, female 176.1
495_1 57 years, female 175.5
265_1 87 years, male 174.3
142_1 61 years, female 173.5
266_1 85 years, male 170.6
81_1 67 years, male 167.5
518_1 75 years, female 164.6
117_1 61 years, male 163.5
246_1 77 years, male 162.5
501_1 88 years, male 162.1
145_1 84 years, male 160.4
396_1 62 years, male 158.9
468_1 89 years, male 156.7
314_1 67 years, male 156.6
6_1 73 years, female 155.5
447_1 81 years, male 154.8
313_1 79 years, female 154.7
288_1 66 years, female 153.1
17_1 71 years, male 152.2
251_1 78 years, male 151.9
322_1 76 years, male 151.9
316_1 62 years, male 151.8
348_1 84 years, male 150.8
254_1 77 years, female 149.5
229_1 69 years, female 149.2
35_1 74 years, female 147.1
109_1 81 years, female 144.1
115_1 83 years, male 144.1
18_1 88 years, male 143.6
311_1 78 years, male 143.3
499_1 55 years, female 142.8
9_1 66 years, female 140.5
376_1 75 years, female 140.4
404_1 82 years, female 139.7
386_1 76 years, male 137.9
526_1 61 years, male 137.9
389_1 86 years, female 137.4
137_1 83 years, male 134.8
480_1 63 years, male 134.2
503_1 68 years, male 134.2
377_1 82 years, female 132.2
41_1 94 years, female 132.0
291_1 76 years, male 131.8
120_1 70 years, female 131.7
189_1 76 years, male 131.5
375_1 74 years, female 131.2
354_1 81 years, female 130.9
319_1 81 years, male 128.4
172_1 72 years, female 127.6
292_1 71 years, male 127.5
384_1 83 years, male 127.5
321_1 62 years, female 127.1
425_1 59 years, female 126.6
293_1 68 years, female 126.5
405_1 91 years, male 125.0
379_1 60 years, male 124.5
286_1 68 years, female 121.3
264_1 73 years, female 120.3
4_1 88 years, female 120.0
177_1 74 years, male 119.2
243_1 75 years, male 116.8
335_1 73 years, female 116.2
517_1 88 years, male 116.0
406_1 79 years, male 115.3
308_1 70 years, female 115.1
320_1 89 years, female 109.6
237_1 82 years, male 109.0
318_1 68 years, male 108.6
506_1 65 years, male 108.3
119_1 70 years, female 107.9
352_1 62 years, male 107.9
42_1 85 years, male 107.3
452_1 88 years, female 107.1
351_1 91 years, male 106.1
353_1 82 years, female 106.0
394_1 75 years, female 106.0
347_1 72 years, male 105.9
163_1 78 years, male 105.6
355_1 70 years, female 101.3
349_1 83 years, male 101.1
356_1 87 years, female 98.8
295_1 61 years, female 98.6
218_1 71 years, female 98.0
317_1 60 years, male 93.9
350_1 84 years, female 89.6
173_1 67 years, male 88.8
99_1 64 years, male 77.6
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

68.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 68.8
FF:10030-101E3 24-65 years, mixed 68.8

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