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  • H2AZ1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:117.9 nTPM
HPA Brain:42.0 nTPM
GTEx:117.9 nTPM
FANTOM5:66.4 Scaled Tags Per Million
Mouse:232.5 nTPM
Allen mouse:17.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.0
Sample id Sample description nTPM
Amygdala
nTPM: 42.0
2814 Male, age 76, right hemisphere 46.0
2514 Male, age 75, right hemisphere 45.8
1987 Female, age 91, left hemisphere 43.1
2695 Female, age 67, right hemisphere 39.0
2517 Female, age 94, left hemisphere 36.2
Basal amygdala
nTPM: 32.4
1955 Male, age 76, both hemispheres 38.2
2110 Male, age 80, left hemisphere 37.4
2609 Male, age 75, right hemisphere 35.3
2685 Female, age 94, left hemisphere 31.4
2243 Female, age 91, right hemisphere 28.1
2827 Female, age 67, right hemisphere 23.7
Central amygdala
nTPM: 39.0
2826 Female, age 94, left hemisphere 48.1
1905 Male, age 76, both hemispheres 46.6
2515 Male, age 75, right hemisphere 43.0
2239 Male, age 80, left hemisphere 29.6
2701 Female, age 91, right hemisphere 27.6
Corticomedial amygdala
nTPM: 32.9
2829 Male, age 80, left hemisphere 39.6
2428 Male, age 75, right hemisphere 37.8
2429 Female, age 94, left hemisphere 36.1
2240 Male, age 76, both hemispheres 29.9
2242 Female, age 91, right hemisphere 29.5
2535 Female, age 67, right hemisphere 24.2
Lateral amygdala
nTPM: 34.8
1883 Male, age 76, both hemispheres 47.5
2534 Female, age 94, left hemisphere 42.8
2516 Male, age 75, right hemisphere 39.6
2830 Female, age 67, right hemisphere 27.4
2256 Male, age 80, left hemisphere 26.4
2255 Female, age 91, right hemisphere 25.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 117.9
Samples: 181

Max nTPM: 315.5
Min nTPM: 60.6
Std nTPM: 37.2
Median nTPM: 110.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 315.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 285.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 225.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 223.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 206.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 200.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 197.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 189.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 183.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 181.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 176.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 176.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 175.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 170.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 167.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 162.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 161.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 161.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 159.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 159.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 157.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 157.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 155.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 154.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 154.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 153.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 153.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 152.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 152.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 150.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 149.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 147.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 146.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 144.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 143.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 143.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 141.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 141.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 140.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 139.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 138.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 138.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 137.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 135.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 133.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 132.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 132.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 132.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 131.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 130.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 130.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 129.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 128.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 128.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 128.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 128.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 127.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 127.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 127.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 127.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 125.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 125.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 125.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 123.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 123.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 122.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 120.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 120.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 119.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 119.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 119.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 119.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 118.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 118.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 118.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 117.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 117.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 116.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 116.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 115.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 113.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 113.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 112.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 111.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 111.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 111.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 111.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 111.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 110.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 110.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 110.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 109.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 109.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 109.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 109.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 109.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 109.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 108.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 108.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 106.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 106.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 106.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 105.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 105.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 104.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 104.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 104.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 104.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 103.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 103.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 103.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 103.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 102.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 102.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 102.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 102.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 101.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 100.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 100.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 100.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 100.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 100.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 99.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 98.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 98.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 98.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 97.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 97.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 95.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 95.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 95.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 94.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 94.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 93.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 92.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 92.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 92.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 91.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 90.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 90.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 90.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 89.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 89.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 89.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 89.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 88.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 88.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 87.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 87.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 87.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 87.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 87.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 85.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 84.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 83.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 83.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 82.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 82.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 81.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 81.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 80.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 80.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 80.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 79.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 78.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 78.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 78.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 77.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 74.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 74.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 73.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 72.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 72.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 71.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 71.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 71.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 70.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 63.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 63.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 60.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

66.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 66.4
FF:10151-102I7 76 years, female 66.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 232.5
Samples: 4

Max nTPM: 235.5
Min nTPM: 226.7
Sample A Male 226.7
Sample B Male 232.5
Sample C Female 235.4
Sample D Female 235.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.1
69734875 Antisense, RP_050503_01_E03, Mouse strain C57BL/6J (56 days, male) 17.1

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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