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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
84.3
nTPM
Monaco:
85.8
nTPM
Schmiedel:
138.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.3
HPA sample
nTPM
gdT-cell nTPM: 48.0
Samples: 6
Max nTPM: 54.4
Min nTPM: 38.9
P10809_1007
47.9
P10809_1022
47.6
P10809_1041
52.0
P10809_1060
47.4
P10809_1077
54.4
P10809_1098
38.9
MAIT T-cell nTPM: 58.7
Samples: 6
Max nTPM: 76.7
Min nTPM: 48.0
P10809_1006
52.0
P10809_1024
76.7
P10809_1043
48.0
P10809_1062
59.9
P10809_1083
61.3
P10809_1097
54.0
Memory CD4 T-cell nTPM: 61.4
Samples: 6
Max nTPM: 70.7
Min nTPM: 51.5
P10809_1014
59.6
P10809_1026
70.7
P10809_1045
60.6
P10809_1064
51.5
P10809_1086
64.2
P10809_1113
61.9
Memory CD8 T-cell nTPM: 50.7
Samples: 5
Max nTPM: 60.7
Min nTPM: 45.7
P10809_1012
45.7
P10809_1027
60.7
P10809_1046
53.0
P10809_1065
48.5
P10809_1111
45.7
Naive CD4 T-cell nTPM: 62.7
Samples: 6
Max nTPM: 71.9
Min nTPM: 55.7
P10809_1015
58.0
P10809_1030
71.9
P10809_1049
67.2
P10809_1068
65.5
P10809_1085
58.1
P10809_1112
55.7
Naive CD8 T-cell nTPM: 57.8
Samples: 6
Max nTPM: 61.8
Min nTPM: 47.7
P10809_1016
61.6
P10809_1031
61.8
P10809_1050
61.6
P10809_1069
47.7
P10809_1087
56.2
P10809_1110
58.1
T-reg nTPM: 84.3
Samples: 6
Max nTPM: 107.7
Min nTPM: 60.4
P10809_1018
60.4
P10809_1037
107.7
P10809_1056
71.9
P10809_1075
94.4
P10809_1094
84.9
P10809_1106
86.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.8
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 67.2
Samples: 4
Max nTPM: 79.3
Min nTPM: 55.9
RHH5202_R3573
79.3
RHH5230_R3602
55.9
RHH5259_R3631
68.3
RHH5288_R3660
65.4
Effector memory CD8 T-cell nTPM: 64.8
Samples: 4
Max nTPM: 71.8
Min nTPM: 55.1
RHH5203_R3574
70.5
RHH5231_R3603
71.8
RHH5260_R3632
61.8
RHH5289_R3661
55.1
MAIT T-cell nTPM: 63.4
Samples: 4
Max nTPM: 68.2
Min nTPM: 52.9
RHH5233_R3605
68.2
RHH5205_R3576
64.4
RHH5262_R3634
68.0
RHH5297_R3663
52.9
Memory CD4 T-cell TFH nTPM: 76.3
Samples: 4
Max nTPM: 103.4
Min nTPM: 57.6
RHH5300_R3666
57.6
RHH5236_R3608
103.4
RHH5265_R3637
67.9
RHH5208_R3579
76.4
Memory CD4 T-cell Th1 nTPM: 73.0
Samples: 4
Max nTPM: 87.1
Min nTPM: 61.6
RHH5210_R3581
79.6
RHH5302_R3668
87.1
RHH5238_R3610
61.6
RHH5267_R3639
63.7
Memory CD4 T-cell Th1/Th17 nTPM: 83.4
Samples: 4
Max nTPM: 122.4
Min nTPM: 47.2
RHH5303_R3669
91.5
RHH5211_R3582
122.4
RHH5239_R3611
47.2
RHH5268_R3640
72.5
Memory CD4 T-cell Th17 nTPM: 74.3
Samples: 4
Max nTPM: 92.0
Min nTPM: 62.7
RHH5304_R3670
73.9
RHH5212_R3583
92.0
RHH5240_R3612
68.7
RHH5269_R3641
62.7
Memory CD4 T-cell Th2 nTPM: 79.7
Samples: 4
Max nTPM: 114.2
Min nTPM: 61.1
RHH5305_R3671
61.1
RHH5213_R3584
114.2
RHH5241_R3613
81.1
RHH5270_R3642
62.2
Naive CD4 T-cell nTPM: 84.6
Samples: 4
Max nTPM: 93.5
Min nTPM: 75.0
RHH5306_R3672
82.4
RHH5214_R3585
93.5
RHH5242_R3614
87.3
RHH5271_R3643
75.0
Naive CD8 T-cell nTPM: 71.5
Samples: 4
Max nTPM: 96.3
Min nTPM: 48.3
RHH5201_R3572
96.3
RHH5229_R3601
48.3
RHH5258_R3630
69.7
RHH5287_R3659
71.5
Non-Vd2 gdTCR nTPM: 58.8
Samples: 4
Max nTPM: 83.2
Min nTPM: 33.5
RHH5235_R3607
33.5
RHH5264_R3636
83.2
RHH5207_R3578
69.3
RHH5299_R3665
49.2
T-reg nTPM: 85.8
Samples: 4
Max nTPM: 119.3
Min nTPM: 67.9
RHH5301_R3667
67.9
RHH5237_R3609
119.3
RHH5266_R3638
68.9
RHH5209_R3580
87.1
Terminal effector memory CD4 T-cell nTPM: 39.4
Samples: 2
Max nTPM: 54.3
Min nTPM: 24.5
RHH5243_R3615
24.5
RHH5272_R3644
54.3
Terminal effector memory CD8 T-cell nTPM: 55.0
Samples: 4
Max nTPM: 58.0
Min nTPM: 50.7
RHH5232_R3604
55.5
RHH5204_R3575
58.0
RHH5261_R3633
55.6
RHH5296_R3662
50.7
Vd2 gdTCR nTPM: 73.8
Samples: 4
Max nTPM: 99.7
Min nTPM: 61.4
RHH5234_R3606
61.4
RHH5206_R3577
99.7
RHH5263_R3635
63.6
RHH5298_R3664
70.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
