We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SERPINI1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SERPINI1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:116.6 nTPM
HPA Brain:66.7 nTPM
GTEx:116.6 nTPM
FANTOM5:115.6 Scaled Tags Per Million
Pig:57.9 nTPM
Mouse:135.9 nTPM
Allen mouse:13.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.7
Sample id Sample description nTPM
Amygdala
nTPM: 66.7
2814 Male, age 76, right hemisphere 107.9
2514 Male, age 75, right hemisphere 69.0
1987 Female, age 91, left hemisphere 53.7
2517 Female, age 94, left hemisphere 52.4
2695 Female, age 67, right hemisphere 50.6
Basal amygdala
nTPM: 52.5
1955 Male, age 76, both hemispheres 91.5
2685 Female, age 94, left hemisphere 60.9
2110 Male, age 80, left hemisphere 54.1
2243 Female, age 91, right hemisphere 38.9
2609 Male, age 75, right hemisphere 38.4
2827 Female, age 67, right hemisphere 31.1
Central amygdala
nTPM: 60.3
1905 Male, age 76, both hemispheres 86.9
2239 Male, age 80, left hemisphere 61.6
2826 Female, age 94, left hemisphere 58.0
2701 Female, age 91, right hemisphere 55.0
2515 Male, age 75, right hemisphere 40.1
Corticomedial amygdala
nTPM: 58.9
2240 Male, age 76, both hemispheres 102.8
2429 Female, age 94, left hemisphere 79.0
2829 Male, age 80, left hemisphere 59.7
2428 Male, age 75, right hemisphere 40.9
2535 Female, age 67, right hemisphere 37.1
2242 Female, age 91, right hemisphere 33.8
Lateral amygdala
nTPM: 52.2
1883 Male, age 76, both hemispheres 85.0
2534 Female, age 94, left hemisphere 68.3
2516 Male, age 75, right hemisphere 51.4
2256 Male, age 80, left hemisphere 42.0
2255 Female, age 91, right hemisphere 39.1
2830 Female, age 67, right hemisphere 27.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 116.6
Samples: 181

Max nTPM: 434.0
Min nTPM: 34.3
Std nTPM: 63.3
Median nTPM: 104.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 434.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 416.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 373.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 309.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 300.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 285.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 238.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 235.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 233.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 231.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 217.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 205.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 199.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 199.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 196.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 191.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 185.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 185.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 183.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 181.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 180.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 178.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 177.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 176.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 175.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 170.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 167.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 165.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 165.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 163.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 163.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 161.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 160.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 155.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 151.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 150.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 149.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 146.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 146.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 144.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 142.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 140.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 139.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 138.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 138.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 138.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 137.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 136.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 136.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 136.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 134.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 133.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 132.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 132.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 129.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 129.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 129.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 128.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 127.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 127.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 126.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 126.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 125.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 124.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 123.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 123.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 123.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 122.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 122.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 121.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 121.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 120.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 119.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 119.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 119.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 118.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 116.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 113.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 112.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 112.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 109.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 107.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 107.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 107.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 106.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 106.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 105.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 105.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 105.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 105.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 104.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 103.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 102.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 101.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 101.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 101.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 99.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 99.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 98.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 98.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 97.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 96.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 96.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 95.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 94.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 93.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 92.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 92.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 92.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 91.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 90.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 88.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 87.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 86.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 86.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 84.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 84.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 83.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 83.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 82.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 82.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 82.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 80.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 80.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 80.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 79.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 79.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 79.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 79.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 78.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 77.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 77.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 77.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 76.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 75.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 74.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 73.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 73.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 72.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 72.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 72.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 71.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 69.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 69.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 69.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 69.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 68.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 68.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 68.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 67.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 67.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 65.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 65.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 64.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 63.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 63.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 59.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 59.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 58.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 58.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 56.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 55.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 55.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 55.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 55.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 55.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 55.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 54.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 53.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 52.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 51.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 47.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 46.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 43.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 41.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 38.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 37.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 37.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 36.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 36.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 34.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

115.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 115.6
FF:10151-102I7 76 years, female 115.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.9
Pig sample Sample description nTPM
Amygdala
nTPM: 57.8
Samples: 4

Max nTPM: 71.1
Min nTPM: 50.3
Sample A Female 58.3
Sample B Female 51.6
Sample C Male 50.3
Sample D Male 71.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 136.0
Samples: 4

Max nTPM: 141.9
Min nTPM: 130.1
Sample A Male 141.4
Sample B Male 141.9
Sample C Female 130.4
Sample D Female 130.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.8
69117449 Antisense, RP_050330_01_B08, Mouse strain C57BL/6J (56 days, male) 17.6
963 Antisense, RP_040324_01_A03, Mouse strain C57BL/6J (56 days, male) 10.0
964 Antisense, RP_040324_01_A03, Mouse strain C57BL/6J (56 days, male) 5.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo