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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:133.1 nTPM
GTEx:133.1 nTPM
FANTOM5:266.7 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA072751
Squamous epithelial cells Low


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 133.1
Samples: 170

Max nTPM: 386.4
Min nTPM: 19.4
Std nTPM: 65.5
Median nTPM: 130.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 386.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 368.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 332.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 291.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 267.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 266.9
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 266.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 249.9
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 248.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 242.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 231.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 227.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 227.2
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 224.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 220.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 220.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 214.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 214.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 209.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 208.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 207.4
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 206.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 201.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 200.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 198.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 197.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 197.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 195.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 195.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 194.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 190.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 183.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 175.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 173.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 172.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 171.9
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 171.3
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 170.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 168.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 167.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 166.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 166.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 165.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 165.0
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 164.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 164.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 164.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 163.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 163.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 162.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 161.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 160.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 159.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 158.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 156.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 155.9
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 155.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 154.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 153.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 153.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 152.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 150.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 150.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 149.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 149.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 149.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 148.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 147.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 144.0
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 143.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 142.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 142.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 141.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 141.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 139.1
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 137.6
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 137.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 137.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 137.0
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 136.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 135.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 133.9
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 132.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 132.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 131.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 128.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 127.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 127.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 127.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 125.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 125.3
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 125.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 124.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 120.8
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 118.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 118.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 117.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 116.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 115.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 115.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 114.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 114.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 114.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 112.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 111.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 111.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 109.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 108.7
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 108.2
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 105.2
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 105.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 105.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 104.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 101.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 101.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 99.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 97.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 93.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 93.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 92.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 90.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 90.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 89.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 87.3
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 87.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 85.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 84.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 83.3
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 82.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 82.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 80.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 80.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 80.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 79.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 75.4
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 74.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 73.7
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 73.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 72.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 71.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 71.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 68.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 68.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 65.4
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 64.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 63.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 63.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 58.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 57.5
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 57.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 56.9
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 55.8
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 55.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 51.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 50.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 46.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 46.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 45.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 41.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 37.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 37.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 36.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 35.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 34.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 34.2
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 32.7
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 29.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 28.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 23.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 19.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

266.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 266.7
FF:10204-103F6 68 years, female 266.7

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