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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.3
nTPM
Monaco:
107.8
nTPM
Schmiedel:
92.0
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.3
HPA sample
nTPM
gdT-cell nTPM: 14.3
Samples: 6
Max nTPM: 19.0
Min nTPM: 11.3
P10809_1007
14.8
P10809_1022
13.8
P10809_1041
11.3
P10809_1060
19.0
P10809_1077
12.5
P10809_1098
14.3
MAIT T-cell nTPM: 11.3
Samples: 6
Max nTPM: 17.6
Min nTPM: 8.0
P10809_1006
13.8
P10809_1024
8.0
P10809_1043
8.4
P10809_1062
10.7
P10809_1083
9.3
P10809_1097
17.6
Memory CD4 T-cell nTPM: 10.9
Samples: 6
Max nTPM: 12.5
Min nTPM: 9.5
P10809_1014
10.9
P10809_1026
9.5
P10809_1045
10.0
P10809_1064
12.5
P10809_1086
12.0
P10809_1113
10.7
Memory CD8 T-cell nTPM: 10.9
Samples: 5
Max nTPM: 15.1
Min nTPM: 7.3
P10809_1012
11.3
P10809_1027
10.6
P10809_1046
10.2
P10809_1065
15.1
P10809_1111
7.3
Naive CD4 T-cell nTPM: 7.7
Samples: 6
Max nTPM: 11.8
Min nTPM: 5.1
P10809_1015
11.8
P10809_1030
6.8
P10809_1049
7.6
P10809_1068
7.9
P10809_1085
5.1
P10809_1112
7.1
Naive CD8 T-cell nTPM: 6.7
Samples: 6
Max nTPM: 9.9
Min nTPM: 3.2
P10809_1016
7.0
P10809_1031
3.2
P10809_1050
7.8
P10809_1069
6.8
P10809_1087
9.9
P10809_1110
5.2
T-reg nTPM: 5.0
Samples: 6
Max nTPM: 9.4
Min nTPM: 2.7
P10809_1018
4.3
P10809_1037
6.8
P10809_1056
3.3
P10809_1075
3.3
P10809_1094
2.7
P10809_1106
9.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.8
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 62.9
Samples: 4
Max nTPM: 68.9
Min nTPM: 56.9
RHH5202_R3573
68.1
RHH5230_R3602
57.6
RHH5259_R3631
68.9
RHH5288_R3660
56.9
Effector memory CD8 T-cell nTPM: 61.9
Samples: 4
Max nTPM: 67.6
Min nTPM: 55.9
RHH5203_R3574
61.0
RHH5231_R3603
55.9
RHH5260_R3632
63.2
RHH5289_R3661
67.6
MAIT T-cell nTPM: 61.5
Samples: 4
Max nTPM: 69.9
Min nTPM: 52.3
RHH5233_R3605
54.4
RHH5205_R3576
69.9
RHH5262_R3634
52.3
RHH5297_R3663
69.5
Memory CD4 T-cell TFH nTPM: 55.7
Samples: 4
Max nTPM: 72.9
Min nTPM: 38.9
RHH5300_R3666
65.1
RHH5236_R3608
72.9
RHH5265_R3637
45.8
RHH5208_R3579
38.9
Memory CD4 T-cell Th1 nTPM: 81.6
Samples: 4
Max nTPM: 97.4
Min nTPM: 71.7
RHH5210_R3581
83.5
RHH5302_R3668
71.7
RHH5238_R3610
97.4
RHH5267_R3639
73.9
Memory CD4 T-cell Th1/Th17 nTPM: 87.6
Samples: 4
Max nTPM: 112.8
Min nTPM: 61.5
RHH5303_R3669
87.1
RHH5211_R3582
61.5
RHH5239_R3611
112.8
RHH5268_R3640
89.0
Memory CD4 T-cell Th17 nTPM: 74.3
Samples: 4
Max nTPM: 87.0
Min nTPM: 63.2
RHH5304_R3670
76.7
RHH5212_R3583
63.2
RHH5240_R3612
87.0
RHH5269_R3641
70.2
Memory CD4 T-cell Th2 nTPM: 75.8
Samples: 4
Max nTPM: 92.5
Min nTPM: 66.5
RHH5305_R3671
92.5
RHH5213_R3584
77.2
RHH5241_R3613
66.8
RHH5270_R3642
66.5
Naive CD4 T-cell nTPM: 68.9
Samples: 4
Max nTPM: 78.2
Min nTPM: 62.7
RHH5306_R3672
71.2
RHH5214_R3585
62.7
RHH5242_R3614
63.3
RHH5271_R3643
78.2
Naive CD8 T-cell nTPM: 46.4
Samples: 4
Max nTPM: 57.6
Min nTPM: 36.5
RHH5201_R3572
36.5
RHH5229_R3601
49.0
RHH5258_R3630
42.5
RHH5287_R3659
57.6
Non-Vd2 gdTCR nTPM: 81.4
Samples: 4
Max nTPM: 98.6
Min nTPM: 59.7
RHH5235_R3607
90.6
RHH5264_R3636
59.7
RHH5207_R3578
98.6
RHH5299_R3665
76.5
T-reg nTPM: 53.9
Samples: 4
Max nTPM: 68.5
Min nTPM: 39.2
RHH5301_R3667
39.2
RHH5237_R3609
68.5
RHH5266_R3638
54.9
RHH5209_R3580
53.1
Terminal effector memory CD4 T-cell nTPM: 107.9
Samples: 2
Max nTPM: 109.1
Min nTPM: 106.6
RHH5243_R3615
106.6
RHH5272_R3644
109.1
Terminal effector memory CD8 T-cell nTPM: 92.8
Samples: 4
Max nTPM: 108.4
Min nTPM: 67.3
RHH5232_R3604
93.7
RHH5204_R3575
67.3
RHH5261_R3633
108.4
RHH5296_R3662
101.6
Vd2 gdTCR nTPM: 82.9
Samples: 4
Max nTPM: 113.1
Min nTPM: 59.9
RHH5234_R3606
85.2
RHH5206_R3577
113.1
RHH5263_R3635
73.5
RHH5298_R3664
59.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
