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  • AP2M1
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:156.1 nTPM
GTEx:156.1 nTPM
FANTOM5:152.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA036849
Squamous epithelial cells Low



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

156.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 156.1
Samples: 170

Max nTPM: 343.0
Min nTPM: 95.4
Std nTPM: 27.8
Median nTPM: 155.5
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 343.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 214.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 211.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 207.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 204.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 202.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 201.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 199.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 198.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 197.7
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 195.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 195.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 192.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 191.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 191.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 190.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 190.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 188.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 186.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 186.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 184.4
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 184.2
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 184.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 183.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 183.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 182.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 182.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 181.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 181.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 180.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 180.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 180.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 180.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 179.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 179.2
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 179.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 178.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 177.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 176.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 176.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 175.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 174.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 173.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 173.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 172.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 168.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 168.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 168.0
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 167.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 167.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 167.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 166.9
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 165.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 165.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 164.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 162.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 161.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 161.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 161.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 160.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 160.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 160.0
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 159.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 159.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 159.5
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 159.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 159.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 158.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 158.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 158.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 158.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 158.1
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 158.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 157.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 157.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 157.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 157.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 157.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 157.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 156.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 156.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 156.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 156.0
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 155.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 155.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 155.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 155.0
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 154.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 154.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 152.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 152.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 151.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 151.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 150.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 150.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 150.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 149.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 149.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 149.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 149.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 148.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 148.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 147.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 147.5
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 147.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 147.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 146.9
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 146.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 145.7
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 144.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 143.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 143.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 143.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 142.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 142.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 142.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 140.9
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 140.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 140.8
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 140.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 139.8
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 138.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 138.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 136.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 136.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 136.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 135.4
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 135.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 135.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 134.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 134.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 134.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 134.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 134.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 132.8
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 131.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 131.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 131.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 130.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 130.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 130.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 129.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 129.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 128.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 128.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 128.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 128.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 127.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 127.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 127.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 127.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 126.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 126.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 126.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 126.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 126.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 125.6
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 125.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 123.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 123.4
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 120.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 118.8
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 118.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 117.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 117.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 114.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 113.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 109.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 106.1
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 95.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

152.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 152.2
FF:10204-103F6 68 years, female 152.2

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