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  • SSU72
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:116.1 nTPM
HPA Brain:82.9 nTPM
GTEx:116.1 nTPM
FANTOM5:166.3 Scaled Tags Per Million
Pig:0.4 nTPM
Mouse:85.4 nTPM
Allen mouse:2.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.9
Sample id Sample description nTPM
Amygdala
nTPM: 82.0
2814 Male, age 76, right hemisphere 86.6
1987 Female, age 91, left hemisphere 82.5
2517 Female, age 94, left hemisphere 82.4
2514 Male, age 75, right hemisphere 81.8
2695 Female, age 67, right hemisphere 76.6
Basal amygdala
nTPM: 79.3
2609 Male, age 75, right hemisphere 86.2
2243 Female, age 91, right hemisphere 84.0
2685 Female, age 94, left hemisphere 82.7
2110 Male, age 80, left hemisphere 81.4
1955 Male, age 76, both hemispheres 76.0
2827 Female, age 67, right hemisphere 65.7
Central amygdala
nTPM: 82.9
2826 Female, age 94, left hemisphere 94.7
1905 Male, age 76, both hemispheres 83.0
2515 Male, age 75, right hemisphere 80.8
2239 Male, age 80, left hemisphere 78.4
2701 Female, age 91, right hemisphere 77.5
Corticomedial amygdala
nTPM: 77.4
2829 Male, age 80, left hemisphere 90.3
2428 Male, age 75, right hemisphere 83.7
2242 Female, age 91, right hemisphere 83.0
2429 Female, age 94, left hemisphere 75.6
2240 Male, age 76, both hemispheres 66.8
2535 Female, age 67, right hemisphere 65.1
Lateral amygdala
nTPM: 79.0
2534 Female, age 94, left hemisphere 92.0
1883 Male, age 76, both hemispheres 83.1
2516 Male, age 75, right hemisphere 81.2
2256 Male, age 80, left hemisphere 80.7
2255 Female, age 91, right hemisphere 70.1
2830 Female, age 67, right hemisphere 67.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 116.1
Samples: 181

Max nTPM: 306.3
Min nTPM: 70.0
Std nTPM: 30.4
Median nTPM: 109.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 306.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 246.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 227.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 193.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 193.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 192.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 191.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 177.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 171.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 165.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 158.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 158.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 156.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 155.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 152.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 151.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 151.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 150.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 148.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 148.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 147.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 147.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 146.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 143.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 141.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 140.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 140.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 140.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 139.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 137.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 137.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 136.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 135.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 133.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 132.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 132.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 132.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 129.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 129.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 127.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 127.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 127.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 127.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 127.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 125.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 125.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 125.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 124.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 124.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 124.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 124.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 123.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 122.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 122.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 121.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 121.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 121.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 120.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 120.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 120.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 120.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 119.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 119.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 119.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 119.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 118.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 117.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 117.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 117.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 116.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 116.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 115.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 115.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 115.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 115.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 114.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 114.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 114.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 114.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 113.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 113.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 113.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 112.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 112.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 111.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 111.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 110.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 110.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 110.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 110.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 109.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 108.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 108.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 108.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 108.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 108.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 108.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 107.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 107.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 106.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 106.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 106.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 106.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 106.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 106.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 105.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 105.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 105.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 105.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 104.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 104.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 104.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 104.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 103.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 103.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 103.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 102.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 102.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 102.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 102.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 102.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 100.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 100.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 100.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 100.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 99.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 99.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 98.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 98.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 98.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 98.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 97.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 97.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 97.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 97.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 96.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 96.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 96.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 96.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 96.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 96.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 95.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 95.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 95.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 95.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 95.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 95.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 94.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 93.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 92.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 92.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 92.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 92.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 92.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 90.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 89.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 89.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 88.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 88.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 88.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 87.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 87.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 87.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 87.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 87.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 87.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 86.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 86.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 86.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 86.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 85.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 84.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 84.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 82.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 81.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 81.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 80.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 74.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 72.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 70.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

166.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 166.3
FF:10151-102I7 76 years, female 166.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.4
Pig sample Sample description nTPM
Amygdala
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Female 0.4
Sample B Female 0.2
Sample C Male 0.5
Sample D Male 0.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 85.4
Samples: 4

Max nTPM: 91.0
Min nTPM: 83.0
Sample A Male 83.0
Sample B Male 91.0
Sample C Female 84.0
Sample D Female 83.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.5
70474827 Antisense, RP_050623_01_B01, Mouse strain C57BL/6J (56 days, male) 2.5

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