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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
45.7
nTPM
HPA Brain:
71.6
nTPM
GTEx:
45.7
nTPM
FANTOM5:
211.5
Scaled Tags Per Million
Pig:
69.9
nTPM
Mouse:
58.6
nTPM
Allen mouse:
2.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA001471
Antibody CAB009828
Glial cells
Not detected
Low
Neuronal cells
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
71.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 71.6
2621
Female, age 67, right hemisphere
125.1
1855
Male, age 76, left hemisphere
81.2
1898
Male, age 80, left hemisphere
79.3
1911
Female, age 85, right hemisphere
51.1
2148
Female, age 91, left hemisphere
47.4
2529
Female, age 94, left hemisphere
45.7
Dentate gyrus nTPM: 50.8
2531
Female, age 67, both hemispheres
62.5
2010
Male, age 76, both hemispheres
52.8
2530
Female, age 94, left hemisphere
49.4
2528
Male, age 74, both hemispheres
48.2
1927
Female, age 91, both hemispheres
46.9
2246
Female, age 85, both hemispheres
44.7
Entorhinal gyrus nTPM: 49.9
2117
Female, age 91, right hemisphere
80.4
1787
Male, age 76, left hemisphere
66.1
2613
Female, age 94, left hemisphere
45.8
2764
Male, age 80, right hemisphere
44.3
1938
Female, age 85, left hemisphere
37.8
2686
Male, age 75, right hemisphere
24.7
Hippocampus, CA1 nTPM: 45.3
2045
Male, age 76, both hemispheres
54.8
2082
Female, age 91, right hemisphere
54.1
1873
Female, age 85, both hemispheres
47.5
2527
Male, age 74, both hemispheres
38.5
2749
Male, age 80, left hemisphere
31.6
Hippocampus, CA2 nTPM: 61.7
1940
Female, age 85, left hemisphere
105.5
2437
Female, age 94, left hemisphere
66.0
1892
Male, age 76, both hemispheres
57.5
2113
Female, age 91, right hemisphere
57.5
1963
Male, age 80, left hemisphere
48.5
2249
Male, age 74, both hemispheres
35.4
Hippocampus, CA3 nTPM: 41.5
1867
Male, age 76, both hemispheres
66.5
2861
Female, age 67, both hemispheres
53.1
1891
Female, age 85, both hemispheres
46.6
2436
Male, age 74, both hemispheres
38.5
2137
Male, age 80, left hemisphere
31.0
2620
Female, age 94, left hemisphere
13.4
Parahippocampal cortex nTPM: 59.9
2250
Female, age 67, right hemisphere
215.4
2018
Male, age 76, both hemispheres
70.9
2693
Female, age 94, both hemispheres
51.2
2245
Female, age 91, both hemispheres
49.6
1990
Female, age 91, right hemisphere
44.6
1850
Male, age 80, both hemispheres
38.7
2532
Female, age 72, left hemisphere
35.0
1933
Female, age 85, both hemispheres
33.7
2692
Male, age 74, both hemispheres
31.1
2622
Female, age 67, right hemisphere
29.3
Perirhinal gyrus nTPM: 54.3
2521
Female, age 94, right hemisphere
92.6
2848
Male, age 76, right hemisphere
47.7
1841
Female, age 85, right hemisphere
45.3
1794
Male, age 80, right hemisphere
44.8
1847
Female, age 91, left hemisphere
40.9
Subiculum nTPM: 58.8
2042
Male, age 76, both hemispheres
86.5
2729
Female, age 91, right hemisphere
79.5
2619
Male, age 74, both hemispheres
54.7
1901
Male, age 80, both hemispheres
50.5
2438
Female, age 94, left hemisphere
43.2
1977
Female, age 85, both hemispheres
38.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 45.7
Samples: 197
Max nTPM: 673.9
Min nTPM: 2.6
Std nTPM: 66.2
Median nTPM: 26.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
673.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
369.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
291.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
234.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
204.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
188.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
184.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
179.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
152.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
137.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
129.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
119.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
119.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
109.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
107.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
106.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
96.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
95.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
93.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
90.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
89.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
87.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
81.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
80.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
80.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
80.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
79.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
77.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
74.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
74.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
74.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
72.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
72.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
72.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
71.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
71.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
71.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
70.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
68.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
63.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
60.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
60.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
60.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
60.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
60.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
60.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
56.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
54.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
53.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
52.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
52.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
52.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
50.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
50.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
50.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
49.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
46.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
45.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
45.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
45.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
45.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
45.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
44.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
44.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
42.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
42.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
41.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
41.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
40.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
40.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
40.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
40.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
39.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
39.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
39.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
38.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
34.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
34.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
33.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
33.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
32.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
32.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
31.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
31.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
31.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
30.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
30.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
30.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
30.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
30.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
29.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
29.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
28.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
27.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
27.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
26.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
26.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
26.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
26.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
26.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
25.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
25.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
25.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
24.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
24.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
23.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
23.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
23.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
23.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
23.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
23.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
22.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
22.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
22.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
22.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
22.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
22.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
21.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
21.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
21.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
20.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
19.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
19.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
18.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
18.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
18.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
18.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
18.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
17.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
17.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
17.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
17.5
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
17.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
17.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
17.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
16.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
16.6
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
16.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
15.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
15.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
15.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
14.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
14.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
14.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
14.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
13.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
13.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
13.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
13.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
12.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
12.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
12.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
11.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
11.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
11.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
11.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
11.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
11.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
11.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
11.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
11.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
11.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
10.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
10.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
10.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
10.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
10.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
10.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
10.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
9.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
9.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
9.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
9.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
9.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
9.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
8.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
8.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
8.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
8.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
7.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
7.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
7.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
7.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
6.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
6.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
6.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
5.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
4.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
4.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
4.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
4.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
4.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
4.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
3.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
3.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
3.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
2.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 58.6
Samples: 4
Max nTPM: 62.9
Min nTPM: 55.0
Sample A
Male
58.0
Sample B
Male
55.0
Sample C
Female
62.9
Sample D
Female
58.3
Hippocampal formation nTPM: 51.5
Samples: 4
Max nTPM: 54.7
Min nTPM: 47.8
Sample A
Male
49.7
Sample B
Male
47.8
Sample C
Female
53.6
Sample D
Female
54.7
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.