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TISSUE PRIMARY DATA URINARY BLADDER Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Urinary bladder
Tissue proteome
Tissue methods
URINARY BLADDER - Expression summary
Protein expression
Urinary bladderi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Urothelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:152.4 nTPM
HPA:152.4 nTPM
GTEx:147.0 nTPM
FANTOM5:91.2 Scaled Tags Per Million
URINARY BLADDER - SINGLE CELL RNA EXPRESSION
Explore single cell type data

URINARY BLADDER - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051428
Urothelial cells Low



URINARY BLADDER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.4
overview
Male, age 74
Urinary bladder sample 264
nTPM: 98.3
Cell types%
Urothelial cells:
5

Smooth muscle cells:
60

Fibroblasts:
20

Endothelial cells:
10

Other cell types:
5

overview
Male, age 80
Urinary bladder sample 265
nTPM: 135.5
Cell types%
Urothelial cells:
10

Smooth muscle cells:
45

Fibroblasts:
15

Endothelial cells:
10

Other cell types:
20

N/A
Female, age 0.1
Urinary bladder sample 1597
nTPM: 227.4
N/A
Female, age 0.1
Urinary bladder sample 1598
nTPM: 148.6

URINARY BLADDER - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.0
GTEx sample id Sample description nTPM
Bladder
Average nTPM: 147.0
Samples: 77

Max nTPM: 269.6
Min nTPM: 77.8
Std nTPM: 44.5
Median nTPM: 136.7
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 269.6
GTEX-R53T-1426-SM-H7OG3 50-59 years, female 260.7
GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 249.7
GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 238.0
GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 222.4
GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 217.4
GTEX-S33H-1926-SM-EYYVH 30-39 years, male 216.7
GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 208.9
GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 202.9
GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 202.4
GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 199.2
GTEX-R45C-2426-SM-HL11G 60-69 years, female 196.8
GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 194.1
GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 190.6
GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 189.6
GTEX-OHPL-1926-SM-HAV18 60-69 years, female 186.3
GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 179.9
GTEX-R55G-1326-SM-HAUYU 40-49 years, female 176.1
GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 173.8
GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 170.2
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 168.7
GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 168.6
GTEX-QV44-1426-SM-GPI8D 50-59 years, male 168.5
GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 168.2
GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 168.1
GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 167.7
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 165.3
GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 163.3
GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 159.8
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 157.9
GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 156.0
GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 152.8
GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 149.0
GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 148.3
GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 147.6
GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 145.1
GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 143.4
GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 143.2
GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 136.7
GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 134.9
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 134.6
GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 133.5
GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 131.2
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 131.1
GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 129.4
GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 128.3
GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 127.4
GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 126.9
GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 125.4
GTEX-RNOR-2126-SM-EXURR 50-59 years, female 123.4
GTEX-T2IS-2526-SM-GRR23 20-29 years, female 123.2
GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 118.2
GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 118.2
GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 115.8
GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 114.6
GTEX-Q734-1226-SM-GRR21 40-49 years, female 114.4
GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 112.7
GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 112.6
GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 112.4
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 111.0
GTEX-R55C-1226-SM-GOQY7 40-49 years, male 110.9
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 110.6
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 110.2
GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 104.8
GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 102.5
GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 100.3
GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 99.1
GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 97.7
GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 97.3
GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 94.2
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 92.8
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 87.7
GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 85.7
GTEX-P44H-2226-SM-E9U4P 40-49 years, male 84.2
GTEX-QXCU-2226-SM-GPI87 50-59 years, male 84.2
GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 79.2
GTEX-REY6-2026-SM-GPRYL 60-69 years, male 77.8
Show allShow less

URINARY BLADDER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Bladder
Scaled Tags Per Million: 91.2
FF:10011-101C2 55,58,79 years, mixed 91.2

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