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  • RAB6B
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:69.5 nTPM
HPA Brain:252.3 nTPM
GTEx:69.5 nTPM
FANTOM5:408.9 Scaled Tags Per Million
Pig:147.9 nTPM
Mouse:342.0 nTPM
Allen mouse:20.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.3
Sample id Sample description nTPM
Amygdala
nTPM: 176.1
2517 Female, age 94, left hemisphere 228.2
2814 Male, age 76, right hemisphere 216.0
1987 Female, age 91, left hemisphere 168.4
2514 Male, age 75, right hemisphere 145.0
2695 Female, age 67, right hemisphere 122.8
Basal amygdala
nTPM: 252.3
2685 Female, age 94, left hemisphere 315.3
2243 Female, age 91, right hemisphere 309.9
2827 Female, age 67, right hemisphere 258.9
2110 Male, age 80, left hemisphere 222.4
1955 Male, age 76, both hemispheres 209.3
2609 Male, age 75, right hemisphere 198.0
Central amygdala
nTPM: 245.3
2826 Female, age 94, left hemisphere 314.6
2239 Male, age 80, left hemisphere 304.6
1905 Male, age 76, both hemispheres 216.2
2701 Female, age 91, right hemisphere 199.5
2515 Male, age 75, right hemisphere 191.7
Corticomedial amygdala
nTPM: 239.4
2535 Female, age 67, right hemisphere 338.8
2242 Female, age 91, right hemisphere 304.6
2829 Male, age 80, left hemisphere 253.2
2429 Female, age 94, left hemisphere 214.0
2240 Male, age 76, both hemispheres 186.1
2428 Male, age 75, right hemisphere 139.6
Lateral amygdala
nTPM: 234.8
2534 Female, age 94, left hemisphere 368.4
2256 Male, age 80, left hemisphere 275.5
2255 Female, age 91, right hemisphere 257.7
1883 Male, age 76, both hemispheres 232.9
2516 Male, age 75, right hemisphere 143.7
2830 Female, age 67, right hemisphere 130.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 69.5
Samples: 181

Max nTPM: 153.7
Min nTPM: 28.1
Std nTPM: 27.6
Median nTPM: 64.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 153.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 144.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 144.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 136.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 135.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 134.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 129.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 127.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 122.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 121.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 119.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 117.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 115.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 113.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 113.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 110.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 109.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 109.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 105.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 105.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 104.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 103.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 101.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 100.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 99.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 99.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 99.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 99.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 97.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 97.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 96.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 95.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 93.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 93.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 93.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 92.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 91.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 91.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 91.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 91.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 91.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 90.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 90.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 88.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 88.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 87.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 86.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 86.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 85.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 85.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 85.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 85.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 84.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 83.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 82.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 81.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 81.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 81.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 80.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 80.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 80.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 80.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 79.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 79.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 78.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 77.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 76.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 75.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 75.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 75.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 75.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 75.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 75.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 74.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 74.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 74.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 74.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 72.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 72.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 71.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 71.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 70.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 69.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 69.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 68.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 68.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 65.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 65.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 64.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 64.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 64.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 63.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 62.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 62.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 62.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 61.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 61.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 61.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 61.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 60.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 60.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 60.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 59.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 59.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 58.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 58.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 57.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 57.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 56.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 56.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 55.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 55.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 55.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 55.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 55.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 54.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 54.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 54.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 54.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 53.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 53.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 52.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 52.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 51.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 51.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 51.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 51.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 50.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 50.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 50.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 50.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 50.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 49.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 49.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 48.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 48.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 48.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 47.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 47.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 46.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 45.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 44.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 43.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 42.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 42.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 42.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 42.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 42.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 41.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 41.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 41.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 41.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 41.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 41.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 41.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 40.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 39.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 39.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 39.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 39.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 39.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 39.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 36.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 35.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 35.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 35.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 34.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 34.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 34.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 33.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 32.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 32.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 31.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 31.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 30.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 30.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 29.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 29.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 29.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 28.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 28.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

408.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 408.9
FF:10151-102I7 76 years, female 408.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.9
Pig sample Sample description nTPM
Amygdala
nTPM: 147.9
Samples: 4

Max nTPM: 208.2
Min nTPM: 101.9
Sample A Female 208.2
Sample B Female 101.9
Sample C Male 154.8
Sample D Male 126.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

342.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 342.0
Samples: 4

Max nTPM: 374.9
Min nTPM: 327.8
Sample A Male 328.5
Sample B Male 336.9
Sample C Female 374.9
Sample D Female 327.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.9
69817886 Antisense, RP_050510_03_H08, Mouse strain C57BL/6J (56 days, male) 20.9

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