We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
209.3
nTPM
Monaco:
823.8
nTPM
Schmiedel:
805.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
209.3
HPA sample
nTPM
gdT-cell nTPM: 102.9
Samples: 6
Max nTPM: 136.7
Min nTPM: 72.6
P10809_1007
72.6
P10809_1022
127.7
P10809_1041
136.7
P10809_1060
102.8
P10809_1077
77.6
P10809_1098
99.9
MAIT T-cell nTPM: 155.6
Samples: 6
Max nTPM: 193.0
Min nTPM: 128.3
P10809_1006
137.6
P10809_1024
193.0
P10809_1043
145.5
P10809_1062
177.7
P10809_1083
151.7
P10809_1097
128.3
Memory CD4 T-cell nTPM: 159.3
Samples: 6
Max nTPM: 214.2
Min nTPM: 122.0
P10809_1014
185.0
P10809_1026
154.8
P10809_1045
214.2
P10809_1064
143.4
P10809_1086
136.6
P10809_1113
122.0
Memory CD8 T-cell nTPM: 123.8
Samples: 5
Max nTPM: 144.9
Min nTPM: 91.0
P10809_1012
144.9
P10809_1027
91.0
P10809_1046
123.1
P10809_1065
137.1
P10809_1111
123.0
Naive CD4 T-cell nTPM: 209.3
Samples: 6
Max nTPM: 251.8
Min nTPM: 181.1
P10809_1015
228.0
P10809_1030
196.9
P10809_1049
214.5
P10809_1068
251.8
P10809_1085
181.1
P10809_1112
183.4
Naive CD8 T-cell nTPM: 182.3
Samples: 6
Max nTPM: 238.2
Min nTPM: 93.8
P10809_1016
238.2
P10809_1031
191.5
P10809_1050
177.2
P10809_1069
202.0
P10809_1087
93.8
P10809_1110
191.1
T-reg nTPM: 184.4
Samples: 6
Max nTPM: 233.7
Min nTPM: 156.4
P10809_1018
156.4
P10809_1037
213.0
P10809_1056
184.3
P10809_1075
233.7
P10809_1094
160.5
P10809_1106
158.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
823.8
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 641.0
Samples: 4
Max nTPM: 763.1
Min nTPM: 577.6
RHH5202_R3573
763.1
RHH5230_R3602
609.0
RHH5259_R3631
614.2
RHH5288_R3660
577.6
Effector memory CD8 T-cell nTPM: 261.6
Samples: 4
Max nTPM: 300.4
Min nTPM: 224.1
RHH5203_R3574
300.4
RHH5231_R3603
264.2
RHH5260_R3632
257.6
RHH5289_R3661
224.1
MAIT T-cell nTPM: 422.4
Samples: 4
Max nTPM: 560.7
Min nTPM: 335.5
RHH5233_R3605
335.5
RHH5205_R3576
560.7
RHH5262_R3634
405.8
RHH5297_R3663
387.5
Memory CD4 T-cell TFH nTPM: 660.1
Samples: 4
Max nTPM: 754.9
Min nTPM: 472.1
RHH5300_R3666
754.9
RHH5236_R3608
678.3
RHH5265_R3637
735.1
RHH5208_R3579
472.1
Memory CD4 T-cell Th1 nTPM: 646.1
Samples: 4
Max nTPM: 731.4
Min nTPM: 560.2
RHH5210_R3581
716.4
RHH5302_R3668
560.2
RHH5238_R3610
731.4
RHH5267_R3639
576.2
Memory CD4 T-cell Th1/Th17 nTPM: 647.5
Samples: 4
Max nTPM: 863.6
Min nTPM: 366.2
RHH5303_R3669
366.2
RHH5211_R3582
705.7
RHH5239_R3611
863.6
RHH5268_R3640
654.3
Memory CD4 T-cell Th17 nTPM: 700.6
Samples: 4
Max nTPM: 775.1
Min nTPM: 514.7
RHH5304_R3670
514.7
RHH5212_R3583
775.1
RHH5240_R3612
740.1
RHH5269_R3641
772.4
Memory CD4 T-cell Th2 nTPM: 675.1
Samples: 4
Max nTPM: 785.6
Min nTPM: 585.6
RHH5305_R3671
619.3
RHH5213_R3584
785.6
RHH5241_R3613
585.6
RHH5270_R3642
709.8
Naive CD4 T-cell nTPM: 823.8
Samples: 4
Max nTPM: 889.0
Min nTPM: 749.0
RHH5306_R3672
749.0
RHH5214_R3585
882.3
RHH5242_R3614
889.0
RHH5271_R3643
775.0
Naive CD8 T-cell nTPM: 807.4
Samples: 4
Max nTPM: 959.5
Min nTPM: 673.3
RHH5201_R3572
673.3
RHH5229_R3601
959.5
RHH5258_R3630
747.8
RHH5287_R3659
849.0
Non-Vd2 gdTCR nTPM: 256.4
Samples: 4
Max nTPM: 360.0
Min nTPM: 183.8
RHH5235_R3607
360.0
RHH5264_R3636
183.8
RHH5207_R3578
289.9
RHH5299_R3665
191.8
T-reg nTPM: 671.5
Samples: 4
Max nTPM: 780.1
Min nTPM: 609.3
RHH5301_R3667
609.3
RHH5237_R3609
682.7
RHH5266_R3638
613.7
RHH5209_R3580
780.1
Terminal effector memory CD4 T-cell nTPM: 391.7
Samples: 2
Max nTPM: 413.6
Min nTPM: 369.8
RHH5243_R3615
369.8
RHH5272_R3644
413.6
Terminal effector memory CD8 T-cell nTPM: 256.3
Samples: 4
Max nTPM: 285.1
Min nTPM: 231.6
RHH5232_R3604
274.0
RHH5204_R3575
231.6
RHH5261_R3633
285.1
RHH5296_R3662
234.3
Vd2 gdTCR nTPM: 408.5
Samples: 4
Max nTPM: 473.5
Min nTPM: 376.0
RHH5234_R3606
473.5
RHH5206_R3577
376.0
RHH5263_R3635
398.5
RHH5298_R3664
386.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
