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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.3
nTPM
Monaco:
12.7
nTPM
Schmiedel:
15.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.3
HPA sample
nTPM
gdT-cell nTPM: 2.1
Samples: 6
Max nTPM: 2.6
Min nTPM: 1.1
P10809_1007
1.9
P10809_1022
2.5
P10809_1041
1.1
P10809_1060
2.6
P10809_1077
2.4
P10809_1098
2.2
MAIT T-cell nTPM: 0.9
Samples: 6
Max nTPM: 2.2
Min nTPM: 0.0
P10809_1006
2.2
P10809_1024
0.0
P10809_1043
2.0
P10809_1062
0.3
P10809_1083
0.6
P10809_1097
0.1
Memory CD4 T-cell nTPM: 3.6
Samples: 6
Max nTPM: 6.1
Min nTPM: 1.8
P10809_1014
3.9
P10809_1026
3.5
P10809_1045
6.1
P10809_1064
2.2
P10809_1086
1.8
P10809_1113
3.8
Memory CD8 T-cell nTPM: 2.1
Samples: 5
Max nTPM: 2.8
Min nTPM: 1.2
P10809_1012
2.8
P10809_1027
2.6
P10809_1046
2.7
P10809_1065
1.2
P10809_1111
1.2
Naive CD4 T-cell nTPM: 4.4
Samples: 6
Max nTPM: 8.6
Min nTPM: 1.1
P10809_1015
3.1
P10809_1030
8.6
P10809_1049
1.1
P10809_1068
5.1
P10809_1085
2.6
P10809_1112
5.6
Naive CD8 T-cell nTPM: 2.5
Samples: 6
Max nTPM: 4.8
Min nTPM: 1.4
P10809_1016
2.1
P10809_1031
1.6
P10809_1050
1.4
P10809_1069
4.8
P10809_1087
1.9
P10809_1110
2.9
T-reg nTPM: 3.6
Samples: 6
Max nTPM: 6.1
Min nTPM: 2.2
P10809_1018
3.3
P10809_1037
2.2
P10809_1056
3.2
P10809_1075
6.1
P10809_1094
4.4
P10809_1106
2.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 5.7
Samples: 4
Max nTPM: 8.4
Min nTPM: 4.2
RHH5202_R3573
5.6
RHH5230_R3602
4.2
RHH5259_R3631
4.5
RHH5288_R3660
8.4
Effector memory CD8 T-cell nTPM: 4.9
Samples: 4
Max nTPM: 5.0
Min nTPM: 4.7
RHH5203_R3574
4.7
RHH5231_R3603
5.0
RHH5260_R3632
5.0
RHH5289_R3661
4.7
MAIT T-cell nTPM: 7.4
Samples: 4
Max nTPM: 11.6
Min nTPM: 3.2
RHH5233_R3605
11.6
RHH5205_R3576
6.8
RHH5262_R3634
8.0
RHH5297_R3663
3.2
Memory CD4 T-cell TFH nTPM: 12.3
Samples: 4
Max nTPM: 24.5
Min nTPM: 6.4
RHH5300_R3666
8.2
RHH5236_R3608
6.4
RHH5265_R3637
10.2
RHH5208_R3579
24.5
Memory CD4 T-cell Th1 nTPM: 7.9
Samples: 4
Max nTPM: 17.0
Min nTPM: 2.9
RHH5210_R3581
5.8
RHH5302_R3668
6.0
RHH5238_R3610
17.0
RHH5267_R3639
2.9
Memory CD4 T-cell Th1/Th17 nTPM: 8.7
Samples: 4
Max nTPM: 13.8
Min nTPM: 4.9
RHH5303_R3669
8.5
RHH5211_R3582
4.9
RHH5239_R3611
13.8
RHH5268_R3640
7.6
Memory CD4 T-cell Th17 nTPM: 10.0
Samples: 4
Max nTPM: 17.3
Min nTPM: 5.1
RHH5304_R3670
5.1
RHH5212_R3583
17.3
RHH5240_R3612
8.4
RHH5269_R3641
9.3
Memory CD4 T-cell Th2 nTPM: 7.3
Samples: 4
Max nTPM: 9.9
Min nTPM: 3.3
RHH5305_R3671
7.0
RHH5213_R3584
3.3
RHH5241_R3613
9.9
RHH5270_R3642
9.1
Naive CD4 T-cell nTPM: 12.7
Samples: 4
Max nTPM: 15.2
Min nTPM: 9.4
RHH5306_R3672
15.2
RHH5214_R3585
13.2
RHH5242_R3614
13.1
RHH5271_R3643
9.4
Naive CD8 T-cell nTPM: 8.0
Samples: 4
Max nTPM: 14.1
Min nTPM: 0.8
RHH5201_R3572
6.8
RHH5229_R3601
0.8
RHH5258_R3630
14.1
RHH5287_R3659
10.4
Non-Vd2 gdTCR nTPM: 6.9
Samples: 4
Max nTPM: 11.5
Min nTPM: 4.2
RHH5235_R3607
4.2
RHH5264_R3636
11.5
RHH5207_R3578
5.8
RHH5299_R3665
6.0
T-reg nTPM: 5.8
Samples: 4
Max nTPM: 10.8
Min nTPM: 3.1
RHH5301_R3667
5.6
RHH5237_R3609
3.5
RHH5266_R3638
3.1
RHH5209_R3580
10.8
Terminal effector memory CD4 T-cell nTPM: 8.2
Samples: 2
Max nTPM: 11.3
Min nTPM: 5.1
RHH5243_R3615
5.1
RHH5272_R3644
11.3
Terminal effector memory CD8 T-cell nTPM: 6.8
Samples: 4
Max nTPM: 8.1
Min nTPM: 4.3
RHH5232_R3604
7.1
RHH5204_R3575
8.1
RHH5261_R3633
4.3
RHH5296_R3662
7.7
Vd2 gdTCR nTPM: 8.2
Samples: 4
Max nTPM: 10.6
Min nTPM: 5.2
RHH5234_R3606
5.2
RHH5206_R3577
7.9
RHH5263_R3635
10.6
RHH5298_R3664
9.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
