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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
32.6
nTPM
Monaco:
182.9
nTPM
Schmiedel:
415.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.6
HPA sample
nTPM
gdT-cell nTPM: 32.6
Samples: 6
Max nTPM: 45.2
Min nTPM: 22.0
P10809_1007
22.0
P10809_1022
35.4
P10809_1041
45.2
P10809_1060
33.8
P10809_1077
29.0
P10809_1098
30.3
MAIT T-cell nTPM: 25.1
Samples: 6
Max nTPM: 28.9
Min nTPM: 16.8
P10809_1006
26.7
P10809_1024
28.9
P10809_1043
25.8
P10809_1062
23.9
P10809_1083
28.7
P10809_1097
16.8
Memory CD4 T-cell nTPM: 23.9
Samples: 6
Max nTPM: 27.2
Min nTPM: 18.0
P10809_1014
18.0
P10809_1026
24.6
P10809_1045
26.1
P10809_1064
22.8
P10809_1086
24.7
P10809_1113
27.2
Memory CD8 T-cell nTPM: 22.6
Samples: 5
Max nTPM: 29.4
Min nTPM: 18.2
P10809_1012
19.6
P10809_1027
23.3
P10809_1046
22.3
P10809_1065
29.4
P10809_1111
18.2
Naive CD4 T-cell nTPM: 24.5
Samples: 6
Max nTPM: 29.1
Min nTPM: 19.6
P10809_1015
19.6
P10809_1030
20.7
P10809_1049
20.9
P10809_1068
29.1
P10809_1085
27.4
P10809_1112
29.1
Naive CD8 T-cell nTPM: 23.8
Samples: 6
Max nTPM: 30.5
Min nTPM: 17.1
P10809_1016
17.1
P10809_1031
30.5
P10809_1050
23.1
P10809_1069
26.4
P10809_1087
24.7
P10809_1110
20.8
T-reg nTPM: 21.2
Samples: 6
Max nTPM: 31.6
Min nTPM: 9.6
P10809_1018
17.1
P10809_1037
9.6
P10809_1056
19.1
P10809_1075
31.6
P10809_1094
26.2
P10809_1106
23.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
182.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 160.7
Samples: 4
Max nTPM: 171.9
Min nTPM: 149.5
RHH5202_R3573
149.5
RHH5230_R3602
167.7
RHH5259_R3631
171.9
RHH5288_R3660
153.7
Effector memory CD8 T-cell nTPM: 133.0
Samples: 4
Max nTPM: 161.0
Min nTPM: 119.3
RHH5203_R3574
120.7
RHH5231_R3603
119.3
RHH5260_R3632
130.9
RHH5289_R3661
161.0
MAIT T-cell nTPM: 141.0
Samples: 4
Max nTPM: 155.7
Min nTPM: 131.8
RHH5233_R3605
155.7
RHH5205_R3576
131.8
RHH5262_R3634
132.1
RHH5297_R3663
144.3
Memory CD4 T-cell TFH nTPM: 152.7
Samples: 4
Max nTPM: 168.8
Min nTPM: 139.0
RHH5300_R3666
139.0
RHH5236_R3608
140.1
RHH5265_R3637
162.7
RHH5208_R3579
168.8
Memory CD4 T-cell Th1 nTPM: 162.7
Samples: 4
Max nTPM: 208.5
Min nTPM: 127.9
RHH5210_R3581
168.9
RHH5302_R3668
145.4
RHH5238_R3610
208.5
RHH5267_R3639
127.9
Memory CD4 T-cell Th1/Th17 nTPM: 136.5
Samples: 4
Max nTPM: 169.9
Min nTPM: 103.9
RHH5303_R3669
148.8
RHH5211_R3582
103.9
RHH5239_R3611
169.9
RHH5268_R3640
123.2
Memory CD4 T-cell Th17 nTPM: 146.3
Samples: 4
Max nTPM: 177.1
Min nTPM: 121.5
RHH5304_R3670
146.1
RHH5212_R3583
121.5
RHH5240_R3612
177.1
RHH5269_R3641
140.4
Memory CD4 T-cell Th2 nTPM: 145.8
Samples: 4
Max nTPM: 170.9
Min nTPM: 132.2
RHH5305_R3671
135.7
RHH5213_R3584
132.2
RHH5241_R3613
170.9
RHH5270_R3642
144.5
Naive CD4 T-cell nTPM: 183.0
Samples: 4
Max nTPM: 212.9
Min nTPM: 164.1
RHH5306_R3672
167.2
RHH5214_R3585
164.1
RHH5242_R3614
212.9
RHH5271_R3643
187.6
Naive CD8 T-cell nTPM: 176.7
Samples: 4
Max nTPM: 198.0
Min nTPM: 154.3
RHH5201_R3572
186.9
RHH5229_R3601
198.0
RHH5258_R3630
154.3
RHH5287_R3659
167.6
Non-Vd2 gdTCR nTPM: 164.2
Samples: 4
Max nTPM: 184.0
Min nTPM: 149.9
RHH5235_R3607
184.0
RHH5264_R3636
152.4
RHH5207_R3578
170.3
RHH5299_R3665
149.9
T-reg nTPM: 142.9
Samples: 4
Max nTPM: 170.5
Min nTPM: 129.8
RHH5301_R3667
138.6
RHH5237_R3609
170.5
RHH5266_R3638
129.8
RHH5209_R3580
132.5
Terminal effector memory CD4 T-cell nTPM: 165.8
Samples: 2
Max nTPM: 174.9
Min nTPM: 156.6
RHH5243_R3615
174.9
RHH5272_R3644
156.6
Terminal effector memory CD8 T-cell nTPM: 158.1
Samples: 4
Max nTPM: 184.6
Min nTPM: 136.9
RHH5232_R3604
184.6
RHH5204_R3575
147.6
RHH5261_R3633
136.9
RHH5296_R3662
163.4
Vd2 gdTCR nTPM: 131.4
Samples: 4
Max nTPM: 148.7
Min nTPM: 107.4
RHH5234_R3606
148.7
RHH5206_R3577
107.4
RHH5263_R3635
141.9
RHH5298_R3664
127.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
