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  • ATP5F1A
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:431.2 nTPM
GTEx:431.2 nTPM
FANTOM5:235.8 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

431.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 431.2
Samples: 105

Max nTPM: 584.0
Min nTPM: 233.8
Std nTPM: 72.6
Median nTPM:
229_1 69 years, female 584.0
246_1 77 years, male 566.2
126_1 63 years, male 559.7
217_1 76 years, male 554.1
153_1 70 years, female 549.7
162_1 79 years, female 548.9
35_1 74 years, female 544.8
375_1 74 years, female 524.5
2_1 77 years, female 523.1
352_1 62 years, male 522.2
466_1 57 years, female 521.3
6_1 73 years, female 519.1
237_1 82 years, male 519.0
468_1 89 years, male 512.9
377_1 82 years, female 508.0
321_1 62 years, female 505.2
526_1 61 years, male 504.7
386_1 76 years, male 501.3
17_1 71 years, male 500.1
43_1 64 years, female 500.0
319_1 81 years, male 496.7
316_1 62 years, male 496.5
518_1 75 years, female 494.9
9_1 66 years, female 490.7
405_1 91 years, male 488.8
189_1 76 years, male 487.3
251_1 78 years, male 487.0
139_1 64 years, female 485.1
81_1 67 years, male 482.4
18_1 88 years, male 479.0
480_1 63 years, male 478.3
425_1 59 years, female 477.5
404_1 82 years, female 475.2
376_1 75 years, female 472.7
499_1 55 years, female 471.7
266_1 85 years, male 467.4
320_1 89 years, female 466.8
145_1 84 years, male 465.8
335_1 73 years, female 462.8
324_1 76 years, male 460.2
117_1 61 years, male 459.4
322_1 76 years, male 457.1
286_1 68 years, female 455.3
172_1 72 years, female 455.2
115_1 83 years, male 451.9
414_1 84 years, female 448.5
384_1 83 years, male 446.0
396_1 62 years, male 444.2
406_1 79 years, male 441.4
313_1 79 years, female 440.4
142_1 61 years, female 440.0
137_1 83 years, male 438.7
389_1 86 years, female 438.6
32_1 67 years, male 437.3
254_1 77 years, female 434.6
265_1 87 years, male 431.2
293_1 68 years, female 430.8
415_1 77 years, female 428.7
495_1 57 years, female 426.0
348_1 84 years, male 425.0
379_1 60 years, male 421.5
243_1 75 years, male 421.3
292_1 71 years, male 421.1
355_1 70 years, female 421.0
311_1 78 years, male 419.7
4_1 88 years, female 415.1
413_1 59 years, female 404.7
149_1 88 years, male 398.7
354_1 81 years, female 398.3
177_1 74 years, male 396.1
503_1 68 years, male 395.0
394_1 75 years, female 393.2
120_1 70 years, female 392.2
490_1 67 years, female 392.2
517_1 88 years, male 392.1
163_1 78 years, male 391.2
501_1 88 years, male 388.6
318_1 68 years, male 381.9
109_1 81 years, female 381.8
447_1 81 years, male 380.9
347_1 72 years, male 375.6
288_1 66 years, female 369.3
315_1 62 years, female 368.9
506_1 65 years, male 365.4
350_1 84 years, female 359.5
42_1 85 years, male 357.5
353_1 82 years, female 353.8
356_1 87 years, female 352.6
264_1 73 years, female 349.8
349_1 83 years, male 348.2
119_1 70 years, female 347.8
218_1 71 years, female 343.4
307_1 66 years, female 340.0
173_1 67 years, male 336.6
351_1 91 years, male 330.2
291_1 76 years, male 330.1
89_1 63 years, male 329.1
491_1 89 years, female 319.7
99_1 64 years, male 317.9
314_1 67 years, male 311.0
295_1 61 years, female 308.2
452_1 88 years, female 307.5
41_1 94 years, female 274.7
317_1 60 years, male 258.0
308_1 70 years, female 233.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

235.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 235.8
FF:10030-101E3 24-65 years, mixed 235.8

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