MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:303.3 nTPM
HPA Brain:276.1 nTPM
GTEx:303.3 nTPM
FANTOM5:138.4 Scaled Tags Per Million
Pig:103.8 nTPM
Mouse:798.8 nTPM
Allen mouse:12.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 276.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 174.2
2219 Male, age 76, both hemispheres 228.1
1827 Male, age 72, unknown 198.3
2019 Male, age 18, unknown 198.1
2411 Female, age 72, unknown 196.3
2828 Female, age 72, unknown 170.8
1833 Male, age 53, unknown 166.8
1870 Female, age 42, unknown 165.3
2666 Male, age 74, left hemisphere 141.5
1830 Male, age 51, unknown 141.0
2586 Male, age 75, left hemisphere 135.8
Dorsal raphe nucleus
nTPM: 205.6
2298 Female, age 72, unknown 253.6
1828 Male, age 53, unknown 237.9
2047 Male, age 72, unknown 199.5
2750 Male, age 76, both hemispheres 171.2
2016 Female, age 72, unknown 165.6
Inferior colliculus
nTPM: 207.9
2097 Female, age 72, unknown 249.5
1890 Male, age 53, unknown 214.8
1848 Female, age 42, unknown 201.6
2849 Male, age 72, unknown 165.7
Median raphe nucleus
nTPM: 176.3
2220 Male, age 76, midline 176.3
Periaquaductal grey, anterior
nTPM: 179.3
1947 Male, age 18, unknown 203.4
1795 Male, age 51, unknown 172.9
2502 Female, age 75, unknown 161.6
Periaquaductal grey, dorsal
nTPM: 162.1
1840 Male, age 53, unknown 185.6
2464 Female, age 72, unknown 155.3
1831 Male, age 72, unknown 155.1
2850 Male, age 76, both hemispheres 152.5
Periaquaductal grey, lateral
nTPM: 167.4
2272 Male, age 74, both hemispheres 209.4
2053 Male, age 18, unknown 147.5
2140 Male, age 76, both hemispheres 145.3
Pretectal area
nTPM: 210.7
1816 Male, age 51, unknown 262.5
1944 Female, age 72, unknown 254.7
2667 Female, age 75, unknown 251.3
1817 Female, age 42, unknown 249.4
2007 Male, age 72, unknown 245.1
2273 Male, age 74, both hemispheres 215.7
1815 Male, age 53, unknown 201.8
2224 Female, age 72, unknown 188.5
2316 Male, age 76, right hemisphere 168.7
2825 Male, age 18, unknown 158.1
2407 Male, age 75, both hemispheres 121.5
Red nucleus
nTPM: 184.4
1821 Female, age 72, unknown 276.4
2725 Female, age 75, unknown 222.7
1954 Female, age 42, unknown 197.6
2503 Female, age 72, unknown 188.9
2823 Male, age 76, right hemisphere 183.1
2785 Male, age 18, unknown 177.3
2769 Male, age 72, unknown 176.7
2227 Male, age 72, unknown 175.4
1904 Male, age 53, unknown 174.9
1865 Male, age 51, unknown 169.7
2588 Male, age 74, left hemisphere 144.5
2584 Male, age 75, left hemisphere 125.4
Substantia nigra
nTPM: 276.1
1916 Female, age 42, unknown 420.5
2241 Male, age 72, unknown 352.5
1851 Male, age 51, unknown 324.4
1889 Female, age 72, unknown 270.2
2409 Female, age 72, unknown 264.9
1941 Male, age 53, unknown 261.5
2699 Male, age 18, unknown 260.9
2665 Male, age 74, both hemispheres 259.2
2590 Female, age 75, unknown 203.1
2583 Male, age 75, right hemisphere 143.5
Superior colliculus
nTPM: 174.2
2087 Female, age 72, unknown 234.3
1895 Male, age 76, right hemisphere 220.1
2261 Male, age 18, unknown 196.3
1796 Male, age 53, unknown 195.3
2587 Male, age 74, left hemisphere 180.8
2668 Female, age 75, unknown 164.0
1839 Male, age 51, unknown 157.9
1913 Female, age 42, unknown 134.9
1995 Male, age 72, unknown 129.8
2664 Male, age 75, both hemispheres 128.5
Ventral tegmental area
nTPM: 227.3
1915 Female, age 42, unknown 295.2
2410 Female, age 72, unknown 281.2
2218 Male, age 76, both hemispheres 277.9
1942 Male, age 51, unknown 203.5
2223 Female, age 72, unknown 156.2
2021 Male, age 53, unknown 149.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 303.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 303.3
Samples: 183

Max nTPM: 660.7
Min nTPM: 89.5
Std nTPM: 112.8
Median nTPM: 297.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 660.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 646.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 633.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 623.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 608.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 607.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 542.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 539.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 537.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 537.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 530.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 138.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.4
FF:10158-103A5 76 years, female 138.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 103.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.8
Samples: 4

Max nTPM: 108.4
Min nTPM: 63.2
Sample A Female 108.4
Sample B Female 67.2
Sample C Male 84.4
Sample D Male 63.2
Midbrain
nTPM: 90.4
Samples: 4

Max nTPM: 113.7
Min nTPM: 76.5
Sample A Female 84.8
Sample B Female 76.5
Sample C Male 113.7
Sample D Male 86.6
Periaqueductal gray
nTPM: 72.1
Samples: 3

Max nTPM: 79.1
Min nTPM: 62.3
Sample B Female 74.9
Sample C Male 79.1
Sample D Male 62.3
Superior colliculi
nTPM: 103.8
Samples: 4

Max nTPM: 125.9
Min nTPM: 85.5
Sample A Female 118.3
Sample B Female 85.5
Sample C Male 125.9
Sample D Male 85.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 798.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 798.8
Samples: 4

Max nTPM: 815.8
Min nTPM: 768.7
Sample A Male 815.8
Sample B Male 800.0
Sample C Female 768.7
Sample D Female 810.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
1579 Antisense, RP_040526_01_D04, Mouse strain C57BL/6J (56 days, male) 12.3
1580 Antisense, RP_040526_01_D04, Mouse strain C57BL/6J (56 days, male) 10.9

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