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  • NDUFC2
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:182.8 nTPM
HPA:182.8 nTPM
GTEx:111.7 nTPM
FANTOM5:226.0 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA038873Antibody HPA056195
Glandular cells MediumNot detected




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.8
overview
Male, age 65
Small intestine sample 232
nTPM: 204
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 178.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 181
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 168

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 111.7
Samples: 207

Max nTPM: 219.9
Min nTPM: 40.3
Std nTPM: 37.8
Median nTPM: 105.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 219.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 214.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 214.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 211.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 211.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 199.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 182.8
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 179.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 178.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 176.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 175.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 175.2
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 175.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 174.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 172.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 172.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 171.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 169.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 168.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 166.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 165.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 163.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 162.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 160.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 157.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 157.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 157.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 155.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 155.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 153.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 152.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 152.6
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 151.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 150.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 150.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 149.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 149.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 147.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 147.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 147.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 147.6
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 146.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 143.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 143.6
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 143.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 142.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 142.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 141.5
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 140.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 140.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 139.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 138.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 138.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 137.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 136.0
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 135.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 134.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 134.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 134.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 134.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 133.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 133.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 133.0
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 132.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 131.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 130.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 130.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 130.1
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 127.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 126.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 124.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 124.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 123.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 122.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 121.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 121.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 121.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 120.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 120.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 119.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 119.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 119.3
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 119.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 117.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 117.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 115.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 115.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 114.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 113.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 113.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 112.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 112.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 112.1
GTEX-1192X-2526-SM-59868 50-59 years, male 111.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 110.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 109.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 109.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 108.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 108.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 108.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 107.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 107.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 106.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 105.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 104.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 104.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 104.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 103.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 102.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 102.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 101.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 101.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 101.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 100.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 100.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 99.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 98.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 98.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 98.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 97.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 97.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 97.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 96.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 96.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 95.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 95.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 95.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 94.9
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 94.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 92.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 92.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 91.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 91.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 89.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 89.3
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 88.7
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 88.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 88.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 88.4
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 88.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 88.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 88.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 87.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 87.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 86.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 86.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 85.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 84.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 83.9
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 83.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 83.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 83.3
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 83.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 82.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 82.1
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 81.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 81.6
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 81.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 80.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 80.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 78.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 78.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 78.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 78.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 77.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 76.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 76.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 76.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 75.7
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 75.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 75.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 75.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 75.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 74.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 74.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 74.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 73.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 73.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 72.2
GTEX-178AV-1226-SM-GOR11 40-49 years, male 71.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 70.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 70.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 70.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 69.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 69.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 69.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 67.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 67.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 66.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 65.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 65.0
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 64.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 63.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 61.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 61.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 60.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 59.5
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 59.5
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 59.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 58.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 57.4
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 55.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 54.6
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 48.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 45.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 40.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 40.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

226.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 226.0
FF:10024-101D6 15,40,85 years, mixed 226.0

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