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TISSUE PRIMARY DATA URINARY BLADDER Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Urinary bladder
Tissue proteome
Tissue methods
URINARY BLADDER - Expression summary
Protein expression
Urinary bladderi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Urothelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:4402.1 nTPM
HPA:2154.1 nTPM
GTEx:4402.1 nTPM
FANTOM5:8290.2 Scaled Tags Per Million
URINARY BLADDER - SINGLE CELL RNA EXPRESSION
Explore single cell type data

URINARY BLADDER - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA019467Antibody HPA061657Antibody CAB001447
Urothelial cells Not detectedNot detectedNot detected







URINARY BLADDER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2154.1
overview
Male, age 74
Urinary bladder sample 264
nTPM: 3291.1
Cell types%
Urothelial cells:
5

Smooth muscle cells:
60

Fibroblasts:
20

Endothelial cells:
10

Other cell types:
5

overview
Male, age 80
Urinary bladder sample 265
nTPM: 478.1
Cell types%
Urothelial cells:
10

Smooth muscle cells:
45

Fibroblasts:
15

Endothelial cells:
10

Other cell types:
20

N/A
Female, age 0.1
Urinary bladder sample 1597
nTPM: 1272.1
N/A
Female, age 0.1
Urinary bladder sample 1598
nTPM: 3575.3

URINARY BLADDER - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4402.1
GTEx sample id Sample description nTPM
Bladder
Average nTPM: 4402.1
Samples: 77

Max nTPM: 17427.9
Min nTPM: 224.2
Std nTPM: 3367.6
Median nTPM: 3738.0
GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 17427.9
GTEX-T2IS-2526-SM-GRR23 20-29 years, female 13973.2
GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 11248.3
GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 11127.9
GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 9737.8
GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 8939.6
GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 8823.5
GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 8652.4
GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 8557.7
GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 8410.4
GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 7889.9
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 7807.7
GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 7772.8
GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 7733.2
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 7442.9
GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 7344.2
GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 7028.8
GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 6980.3
GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 6906.5
GTEX-QXCU-2226-SM-GPI87 50-59 years, male 6826.1
GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 6348.9
GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 6083.6
GTEX-QV44-1426-SM-GPI8D 50-59 years, male 5499.2
GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 5447.8
GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 5119.3
GTEX-REY6-2026-SM-GPRYL 60-69 years, male 5116.3
GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 5116.2
GTEX-R55C-1226-SM-GOQY7 40-49 years, male 5042.0
GTEX-R55G-1326-SM-HAUYU 40-49 years, female 4965.2
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 4609.6
GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 4438.4
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 4404.2
GTEX-P44H-2226-SM-E9U4P 40-49 years, male 4254.0
GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 4160.3
GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 4122.0
GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 4044.8
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 4017.9
GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 3790.0
GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 3738.0
GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 3671.7
GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 3539.2
GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 3530.4
GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 3368.1
GTEX-Q734-1226-SM-GRR21 40-49 years, female 3352.1
GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 3094.2
GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 3075.3
GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 2893.1
GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 2505.3
GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 2421.1
GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 2340.6
GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 2254.8
GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 2245.2
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 2065.5
GTEX-RNOR-2126-SM-EXURR 50-59 years, female 2059.4
GTEX-S33H-1926-SM-EYYVH 30-39 years, male 1958.4
GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 1902.4
GTEX-R45C-2426-SM-HL11G 60-69 years, female 1870.6
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 1847.5
GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 1682.4
GTEX-R53T-1426-SM-H7OG3 50-59 years, female 1644.1
GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 1572.1
GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 1436.4
GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 1302.4
GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 1275.4
GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 1195.7
GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 1056.1
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 907.1
GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 874.5
GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 844.0
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 822.6
GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 794.9
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 749.0
GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 568.3
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 437.6
GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 373.7
GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 253.5
GTEX-OHPL-1926-SM-HAV18 60-69 years, female 224.2
Show allShow less

URINARY BLADDER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

8290.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Bladder
Scaled Tags Per Million: 8290.2
FF:10011-101C2 55,58,79 years, mixed 8290.2

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