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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA028910
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA073279
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Medium
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1101.4
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 1101.4
Samples: 105
Max nTPM: 2367.6
Min nTPM: 385.4
Std nTPM: 346.3
Median nTPM:
218_1
71 years, female
2367.6
354_1
81 years, female
1745.2
352_1
62 years, male
1718.7
447_1
81 years, male
1716.3
319_1
81 years, male
1703.2
237_1
82 years, male
1672.9
6_1
73 years, female
1662.1
375_1
74 years, female
1650.2
172_1
72 years, female
1635.9
321_1
62 years, female
1605.7
386_1
76 years, male
1561.9
379_1
60 years, male
1552.0
163_1
78 years, male
1534.8
322_1
76 years, male
1529.2
384_1
83 years, male
1519.7
355_1
70 years, female
1502.9
394_1
75 years, female
1491.7
243_1
75 years, male
1440.7
377_1
82 years, female
1432.7
389_1
86 years, female
1432.4
350_1
84 years, female
1392.8
189_1
76 years, male
1383.1
376_1
75 years, female
1380.2
347_1
72 years, male
1331.3
349_1
83 years, male
1329.7
425_1
59 years, female
1327.0
246_1
77 years, male
1316.5
35_1
74 years, female
1313.7
353_1
82 years, female
1293.8
286_1
68 years, female
1290.2
173_1
67 years, male
1285.2
320_1
89 years, female
1278.2
316_1
62 years, male
1260.8
229_1
69 years, female
1257.9
293_1
68 years, female
1255.3
356_1
87 years, female
1251.7
317_1
60 years, male
1244.5
503_1
68 years, male
1244.1
351_1
91 years, male
1205.9
307_1
66 years, female
1200.9
177_1
74 years, male
1190.6
251_1
78 years, male
1173.3
405_1
91 years, male
1171.7
318_1
68 years, male
1163.9
406_1
79 years, male
1157.5
396_1
62 years, male
1129.9
2_1
77 years, female
1117.1
480_1
63 years, male
1094.4
266_1
85 years, male
1093.8
526_1
61 years, male
1087.4
404_1
82 years, female
1072.7
335_1
73 years, female
1063.8
265_1
87 years, male
1043.9
99_1
64 years, male
1022.0
452_1
88 years, female
1022.0
4_1
88 years, female
1019.3
217_1
76 years, male
1015.6
153_1
70 years, female
1009.4
468_1
89 years, male
1005.3
311_1
78 years, male
999.8
291_1
76 years, male
993.7
292_1
71 years, male
971.6
137_1
83 years, male
965.8
348_1
84 years, male
964.8
41_1
94 years, female
964.5
518_1
75 years, female
961.4
145_1
84 years, male
955.4
517_1
88 years, male
954.7
324_1
76 years, male
952.4
115_1
83 years, male
945.9
264_1
73 years, female
943.3
495_1
57 years, female
937.8
42_1
85 years, male
935.7
295_1
61 years, female
923.3
17_1
71 years, male
922.4
254_1
77 years, female
900.2
126_1
63 years, male
881.0
308_1
70 years, female
876.0
313_1
79 years, female
871.2
415_1
77 years, female
869.5
9_1
66 years, female
863.0
506_1
65 years, male
831.6
315_1
62 years, female
825.7
499_1
55 years, female
824.3
142_1
61 years, female
818.3
117_1
61 years, male
805.5
414_1
84 years, female
800.0
120_1
70 years, female
789.4
288_1
66 years, female
754.7
139_1
64 years, female
751.8
162_1
79 years, female
741.4
18_1
88 years, male
713.0
314_1
67 years, male
691.1
43_1
64 years, female
666.3
109_1
81 years, female
664.6
32_1
67 years, male
655.9
466_1
57 years, female
653.1
81_1
67 years, male
648.3
490_1
67 years, female
637.2
119_1
70 years, female
573.7
89_1
63 years, male
560.7
413_1
59 years, female
497.2
501_1
88 years, male
418.5
149_1
88 years, male
417.8
491_1
89 years, female
385.4
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.