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TPM3
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • TPM3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:111.3 nTPM
FANTOM5:76.9 Scaled Tags Per Million
Pig:157.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA000261Antibody HPA009066Antibody HPA047089Antibody HPA053624
Glial cells Not detectedLowNot detectedMedium
Neuronal cells Not detectedMediumLowMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 111.3
Samples: 300

Max nTPM: 272.5
Min nTPM: 59.0
Std nTPM: 30.2
Median nTPM: 105.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 272.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 235.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 215.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 209.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 190.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 182.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 182.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 178.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 175.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 173.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 173.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 173.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 172.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 172.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 170.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 168.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 167.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 167.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 165.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 164.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 163.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 161.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 161.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 160.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 154.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 154.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 153.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 152.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 150.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 149.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 149.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 148.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 147.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 146.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 146.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 145.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 144.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 144.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 144.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 143.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 143.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 142.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 142.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 142.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 141.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 141.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 139.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 139.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 139.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 138.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 138.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 137.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 136.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 136.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 135.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 135.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 135.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 133.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 133.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 133.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 132.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 132.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 131.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 131.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 130.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 130.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 130.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 130.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 130.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 129.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 129.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 129.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 128.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 128.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 127.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 127.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 127.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 127.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 125.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 124.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 123.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 123.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 123.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 123.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 122.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 122.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 122.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 122.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 122.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 121.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 121.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 121.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 120.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 120.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 120.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 119.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 119.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 118.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 118.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 118.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 118.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 118.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 117.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 117.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 117.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 116.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 116.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 115.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 115.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 115.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 115.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 115.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 115.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 114.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 114.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 114.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 113.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 113.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 113.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 113.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 112.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 112.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 111.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 111.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 110.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 110.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 110.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 110.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 110.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 110.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 109.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 109.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 109.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 109.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 108.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 108.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 108.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 108.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 108.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 107.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 107.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 106.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 106.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 106.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 106.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 105.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 105.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 105.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 105.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 105.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 105.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 104.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 104.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 104.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 104.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 104.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 103.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 103.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 103.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 103.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 103.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 103.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 103.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 102.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 102.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 102.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 102.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 102.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 102.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 101.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 101.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 100.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 100.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 100.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 99.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 99.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 99.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 99.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 99.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 99.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 98.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 98.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 98.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 98.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 98.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 97.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 97.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 97.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 97.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 96.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 96.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 96.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 96.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 96.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 95.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 95.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 95.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 95.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 95.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 95.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 94.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 94.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 94.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 94.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 94.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 94.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 94.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 93.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 93.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 93.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 93.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 93.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 93.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 93.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 92.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 92.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 92.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 92.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 92.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 92.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 92.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 92.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 92.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 91.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 91.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 91.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 91.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 91.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 91.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 91.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 90.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 90.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 90.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 90.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 89.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 89.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 88.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 87.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 87.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 87.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 87.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 86.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 86.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 86.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 85.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 84.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 84.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 84.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 83.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 83.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 83.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 83.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 83.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 82.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 82.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 82.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 82.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 82.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 81.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 81.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 81.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 81.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 81.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 80.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 80.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 80.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 80.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 80.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 79.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 79.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 79.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 78.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 78.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 78.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 77.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 77.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 76.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 76.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 76.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 74.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 74.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 73.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 73.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 73.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 73.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 73.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 73.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 72.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 72.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 72.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 70.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 70.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 68.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 67.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 65.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 65.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 64.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 63.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 60.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 59.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

76.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 76.9
FF:10164-103B2 76 years, female 76.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.2
Pig sample Sample description nTPM
Caudate
nTPM: 157.2
Samples: 4

Max nTPM: 184.8
Min nTPM: 137.8
Sample A Female 147.9
Sample B Female 158.4
Sample C Male 184.8
Sample D Male 137.8

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