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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
700.2
nTPM
Monaco:
1288.2
nTPM
Schmiedel:
234.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
700.2
HPA sample
nTPM
gdT-cell nTPM: 697.4
Samples: 6
Max nTPM: 925.3
Min nTPM: 492.4
P10809_1007
492.4
P10809_1022
880.3
P10809_1041
925.3
P10809_1060
611.3
P10809_1077
724.9
P10809_1098
549.9
MAIT T-cell nTPM: 580.7
Samples: 6
Max nTPM: 712.3
Min nTPM: 462.1
P10809_1006
462.1
P10809_1024
712.3
P10809_1043
674.6
P10809_1062
617.4
P10809_1083
508.5
P10809_1097
509.2
Memory CD4 T-cell nTPM: 566.3
Samples: 6
Max nTPM: 692.9
Min nTPM: 423.0
P10809_1014
423.0
P10809_1026
602.3
P10809_1045
692.9
P10809_1064
590.1
P10809_1086
589.6
P10809_1113
499.8
Memory CD8 T-cell nTPM: 615.1
Samples: 5
Max nTPM: 739.3
Min nTPM: 485.6
P10809_1012
485.6
P10809_1027
701.8
P10809_1046
739.3
P10809_1065
647.8
P10809_1111
501.1
Naive CD4 T-cell nTPM: 420.6
Samples: 6
Max nTPM: 505.7
Min nTPM: 277.6
P10809_1015
277.6
P10809_1030
477.2
P10809_1049
448.0
P10809_1068
445.5
P10809_1085
505.7
P10809_1112
369.5
Naive CD8 T-cell nTPM: 526.7
Samples: 6
Max nTPM: 637.3
Min nTPM: 337.4
P10809_1016
337.4
P10809_1031
546.4
P10809_1050
602.3
P10809_1069
627.6
P10809_1087
637.3
P10809_1110
409.3
T-reg nTPM: 700.2
Samples: 6
Max nTPM: 902.0
Min nTPM: 598.7
P10809_1018
601.0
P10809_1037
745.3
P10809_1056
902.0
P10809_1075
598.7
P10809_1094
728.0
P10809_1106
626.0
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1288.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 821.0
Samples: 4
Max nTPM: 933.5
Min nTPM: 673.5
RHH5202_R3573
933.5
RHH5230_R3602
925.7
RHH5259_R3631
673.5
RHH5288_R3660
751.3
Effector memory CD8 T-cell nTPM: 1208.9
Samples: 4
Max nTPM: 1359.6
Min nTPM: 1101.6
RHH5203_R3574
1271.9
RHH5231_R3603
1102.6
RHH5260_R3632
1101.6
RHH5289_R3661
1359.6
MAIT T-cell nTPM: 952.9
Samples: 4
Max nTPM: 1072.5
Min nTPM: 748.2
RHH5233_R3605
1035.6
RHH5205_R3576
1072.5
RHH5262_R3634
955.1
RHH5297_R3663
748.2
Memory CD4 T-cell TFH nTPM: 824.8
Samples: 4
Max nTPM: 915.7
Min nTPM: 659.4
RHH5300_R3666
659.4
RHH5236_R3608
915.7
RHH5265_R3637
823.4
RHH5208_R3579
900.7
Memory CD4 T-cell Th1 nTPM: 759.5
Samples: 4
Max nTPM: 846.8
Min nTPM: 644.4
RHH5210_R3581
711.6
RHH5302_R3668
846.8
RHH5238_R3610
644.4
RHH5267_R3639
835.1
Memory CD4 T-cell Th1/Th17 nTPM: 900.6
Samples: 4
Max nTPM: 986.6
Min nTPM: 841.9
RHH5303_R3669
986.6
RHH5211_R3582
930.7
RHH5239_R3611
841.9
RHH5268_R3640
843.0
Memory CD4 T-cell Th17 nTPM: 988.7
Samples: 4
Max nTPM: 1271.5
Min nTPM: 801.1
RHH5304_R3670
930.3
RHH5212_R3583
951.7
RHH5240_R3612
1271.5
RHH5269_R3641
801.1
Memory CD4 T-cell Th2 nTPM: 986.2
Samples: 4
Max nTPM: 1081.2
Min nTPM: 883.3
RHH5305_R3671
883.3
RHH5213_R3584
1081.2
RHH5241_R3613
1058.7
RHH5270_R3642
921.4
Naive CD4 T-cell nTPM: 659.6
Samples: 4
Max nTPM: 691.8
Min nTPM: 630.3
RHH5306_R3672
639.6
RHH5214_R3585
676.8
RHH5242_R3614
691.8
RHH5271_R3643
630.3
Naive CD8 T-cell nTPM: 713.0
Samples: 4
Max nTPM: 762.7
Min nTPM: 677.2
RHH5201_R3572
762.7
RHH5229_R3601
695.5
RHH5258_R3630
677.2
RHH5287_R3659
716.6
Non-Vd2 gdTCR nTPM: 1288.2
Samples: 4
Max nTPM: 1377.7
Min nTPM: 1050.7
RHH5235_R3607
1362.5
RHH5264_R3636
1377.7
RHH5207_R3578
1361.9
RHH5299_R3665
1050.7
T-reg nTPM: 812.9
Samples: 4
Max nTPM: 1010.1
Min nTPM: 729.0
RHH5301_R3667
729.0
RHH5237_R3609
1010.1
RHH5266_R3638
742.5
RHH5209_R3580
769.8
Terminal effector memory CD4 T-cell nTPM: 1226.1
Samples: 2
Max nTPM: 1329.1
Min nTPM: 1123.1
RHH5243_R3615
1329.1
RHH5272_R3644
1123.1
Terminal effector memory CD8 T-cell nTPM: 1231.1
Samples: 4
Max nTPM: 1402.5
Min nTPM: 1109.4
RHH5232_R3604
1273.6
RHH5204_R3575
1109.4
RHH5261_R3633
1402.5
RHH5296_R3662
1139.0
Vd2 gdTCR nTPM: 966.3
Samples: 4
Max nTPM: 1153.0
Min nTPM: 710.0
RHH5234_R3606
939.9
RHH5206_R3577
1153.0
RHH5263_R3635
1062.4
RHH5298_R3664
710.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
