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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:101.7 nTPM
HPA:101.7 nTPM
GTEx:98.8 nTPM
FANTOM5:254.2 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA008455Antibody HPA031125Antibody CAB002781Antibody CAB068195
Glandular cells MediumHighLowMedium








SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.7
overview
Male, age 65
Small intestine sample 232
nTPM: 75.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 113.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 112.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 104.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 98.8
Samples: 207

Max nTPM: 276.6
Min nTPM: 52.1
Std nTPM: 36.2
Median nTPM: 89.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 276.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 275.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 261.6
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 229.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 225.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 204.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 194.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 186.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 180.2
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 176.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 172.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 168.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 166.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 156.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 153.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 153.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 148.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 146.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 146.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 136.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 136.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 135.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 135.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 130.3
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 129.2
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 127.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 126.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 125.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 123.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 119.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 118.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 118.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 117.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 116.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 116.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 115.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 115.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 115.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 114.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 113.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 112.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 112.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 112.1
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 112.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 111.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 110.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 109.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 108.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 108.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 107.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 106.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 106.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 106.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 106.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 105.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 105.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 104.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 104.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 103.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 101.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 101.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 101.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 100.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 100.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 100.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 100.0
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 99.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 99.5
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 99.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 98.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 98.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 98.5
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 98.0
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 97.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 97.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 97.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 96.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 96.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 96.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 96.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 95.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 95.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 95.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 95.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 94.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 94.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 94.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 94.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 94.1
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 93.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 93.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 92.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 92.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 91.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 91.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 91.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 91.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 91.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 90.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 90.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 90.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 90.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 89.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 89.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 89.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 89.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 89.3
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 88.9
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 88.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 88.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 88.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 88.6
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 88.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 88.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 88.0
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 87.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 87.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 87.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 87.2
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 87.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 86.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 86.6
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 86.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 86.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 85.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 85.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 85.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 85.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 84.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 83.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 83.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 83.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 83.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 83.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 83.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 82.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 82.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 82.5
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 82.4
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 82.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 82.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 82.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 82.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 81.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 81.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 81.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 81.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 81.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 80.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 80.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 80.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 80.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 80.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 79.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 79.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 78.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 78.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 78.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 78.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 77.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 76.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 76.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 75.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 75.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 75.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 75.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 75.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 74.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 74.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 74.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 73.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 73.0
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 72.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 72.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 72.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 71.3
GTEX-1192X-2526-SM-59868 50-59 years, male 71.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 71.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 70.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 70.6
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 70.4
GTEX-178AV-1226-SM-GOR11 40-49 years, male 70.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 68.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 68.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 68.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 66.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 66.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 66.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 65.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 65.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 65.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 64.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 64.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 64.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 64.0
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 63.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 63.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 62.9
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 60.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 59.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 59.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 56.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 56.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 56.1
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 55.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 55.3
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 52.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

254.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 254.2
FF:10024-101D6 15,40,85 years, mixed 254.2

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