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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
78.7
nTPM
Monaco:
204.4
nTPM
Schmiedel:
100.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.7
HPA sample
nTPM
gdT-cell nTPM: 37.9
Samples: 6
Max nTPM: 59.4
Min nTPM: 27.9
P10809_1007
31.9
P10809_1022
37.6
P10809_1041
59.4
P10809_1060
32.7
P10809_1077
27.9
P10809_1098
37.7
MAIT T-cell nTPM: 31.2
Samples: 6
Max nTPM: 40.8
Min nTPM: 25.5
P10809_1006
31.6
P10809_1024
26.3
P10809_1043
40.8
P10809_1062
25.5
P10809_1083
29.5
P10809_1097
33.7
Memory CD4 T-cell nTPM: 49.1
Samples: 6
Max nTPM: 64.4
Min nTPM: 31.3
P10809_1014
64.4
P10809_1026
47.8
P10809_1045
49.4
P10809_1064
37.5
P10809_1086
31.3
P10809_1113
63.9
Memory CD8 T-cell nTPM: 34.4
Samples: 5
Max nTPM: 48.0
Min nTPM: 21.4
P10809_1012
48.0
P10809_1027
21.4
P10809_1046
40.0
P10809_1065
25.8
P10809_1111
36.7
Naive CD4 T-cell nTPM: 28.4
Samples: 6
Max nTPM: 42.4
Min nTPM: 11.6
P10809_1015
32.3
P10809_1030
28.6
P10809_1049
11.6
P10809_1068
32.1
P10809_1085
23.5
P10809_1112
42.4
Naive CD8 T-cell nTPM: 23.0
Samples: 6
Max nTPM: 30.4
Min nTPM: 15.2
P10809_1016
30.4
P10809_1031
15.2
P10809_1050
25.4
P10809_1069
20.1
P10809_1087
21.2
P10809_1110
25.8
T-reg nTPM: 78.6
Samples: 6
Max nTPM: 117.5
Min nTPM: 51.7
P10809_1018
117.5
P10809_1037
89.0
P10809_1056
51.7
P10809_1075
65.3
P10809_1094
69.2
P10809_1106
79.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
204.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 122.8
Samples: 4
Max nTPM: 146.2
Min nTPM: 105.8
RHH5202_R3573
117.2
RHH5230_R3602
146.2
RHH5259_R3631
122.1
RHH5288_R3660
105.8
Effector memory CD8 T-cell nTPM: 113.0
Samples: 4
Max nTPM: 123.5
Min nTPM: 102.6
RHH5203_R3574
123.5
RHH5231_R3603
102.6
RHH5260_R3632
111.3
RHH5289_R3661
114.5
MAIT T-cell nTPM: 89.4
Samples: 4
Max nTPM: 116.6
Min nTPM: 68.5
RHH5233_R3605
93.2
RHH5205_R3576
116.6
RHH5262_R3634
79.1
RHH5297_R3663
68.5
Memory CD4 T-cell TFH nTPM: 155.0
Samples: 4
Max nTPM: 175.2
Min nTPM: 141.5
RHH5300_R3666
148.2
RHH5236_R3608
175.2
RHH5265_R3637
141.5
RHH5208_R3579
155.0
Memory CD4 T-cell Th1 nTPM: 134.5
Samples: 4
Max nTPM: 158.0
Min nTPM: 113.3
RHH5210_R3581
126.3
RHH5302_R3668
113.3
RHH5238_R3610
158.0
RHH5267_R3639
140.3
Memory CD4 T-cell Th1/Th17 nTPM: 157.7
Samples: 4
Max nTPM: 173.2
Min nTPM: 129.5
RHH5303_R3669
129.5
RHH5211_R3582
169.9
RHH5239_R3611
173.2
RHH5268_R3640
158.1
Memory CD4 T-cell Th17 nTPM: 204.4
Samples: 4
Max nTPM: 284.5
Min nTPM: 156.7
RHH5304_R3670
156.7
RHH5212_R3583
186.3
RHH5240_R3612
284.5
RHH5269_R3641
190.1
Memory CD4 T-cell Th2 nTPM: 148.3
Samples: 4
Max nTPM: 154.4
Min nTPM: 139.0
RHH5305_R3671
139.0
RHH5213_R3584
154.4
RHH5241_R3613
146.7
RHH5270_R3642
153.0
Naive CD4 T-cell nTPM: 97.8
Samples: 4
Max nTPM: 115.4
Min nTPM: 73.3
RHH5306_R3672
107.7
RHH5214_R3585
94.9
RHH5242_R3614
115.4
RHH5271_R3643
73.3
Naive CD8 T-cell nTPM: 68.1
Samples: 4
Max nTPM: 91.1
Min nTPM: 50.4
RHH5201_R3572
50.4
RHH5229_R3601
91.1
RHH5258_R3630
63.1
RHH5287_R3659
67.8
Non-Vd2 gdTCR nTPM: 105.9
Samples: 4
Max nTPM: 139.1
Min nTPM: 87.7
RHH5235_R3607
139.1
RHH5264_R3636
93.2
RHH5207_R3578
87.7
RHH5299_R3665
103.5
T-reg nTPM: 147.9
Samples: 4
Max nTPM: 178.9
Min nTPM: 127.5
RHH5301_R3667
141.5
RHH5237_R3609
178.9
RHH5266_R3638
127.5
RHH5209_R3580
143.8
Terminal effector memory CD4 T-cell nTPM: 118.6
Samples: 2
Max nTPM: 120.2
Min nTPM: 117.0
RHH5243_R3615
120.2
RHH5272_R3644
117.0
Terminal effector memory CD8 T-cell nTPM: 107.6
Samples: 4
Max nTPM: 132.9
Min nTPM: 74.1
RHH5232_R3604
132.9
RHH5204_R3575
74.1
RHH5261_R3633
116.2
RHH5296_R3662
107.2
Vd2 gdTCR nTPM: 88.4
Samples: 4
Max nTPM: 104.9
Min nTPM: 76.5
RHH5234_R3606
83.2
RHH5206_R3577
89.1
RHH5263_R3635
104.9
RHH5298_R3664
76.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
