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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.1
nTPM
Monaco:
22.4
nTPM
Schmiedel:
9.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.1
HPA sample
nTPM
gdT-cell nTPM: 15.3
Samples: 6
Max nTPM: 18.4
Min nTPM: 12.1
P10809_1007
13.8
P10809_1022
17.2
P10809_1041
14.0
P10809_1060
12.1
P10809_1077
16.1
P10809_1098
18.4
MAIT T-cell nTPM: 17.0
Samples: 6
Max nTPM: 30.3
Min nTPM: 10.8
P10809_1006
10.8
P10809_1024
30.3
P10809_1043
15.5
P10809_1062
14.4
P10809_1083
16.7
P10809_1097
14.5
Memory CD4 T-cell nTPM: 14.7
Samples: 6
Max nTPM: 19.7
Min nTPM: 11.8
P10809_1014
11.8
P10809_1026
19.7
P10809_1045
16.3
P10809_1064
13.6
P10809_1086
12.3
P10809_1113
14.4
Memory CD8 T-cell nTPM: 14.7
Samples: 5
Max nTPM: 17.0
Min nTPM: 11.1
P10809_1012
16.5
P10809_1027
11.1
P10809_1046
17.0
P10809_1065
14.3
P10809_1111
14.8
Naive CD4 T-cell nTPM: 13.9
Samples: 6
Max nTPM: 16.9
Min nTPM: 8.9
P10809_1015
13.2
P10809_1030
12.7
P10809_1049
16.6
P10809_1068
15.2
P10809_1085
8.9
P10809_1112
16.9
Naive CD8 T-cell nTPM: 18.1
Samples: 6
Max nTPM: 42.1
Min nTPM: 7.4
P10809_1016
13.6
P10809_1031
42.1
P10809_1050
17.2
P10809_1069
7.4
P10809_1087
12.9
P10809_1110
15.2
T-reg nTPM: 12.8
Samples: 6
Max nTPM: 20.1
Min nTPM: 9.2
P10809_1018
12.0
P10809_1037
20.1
P10809_1056
9.2
P10809_1075
11.9
P10809_1094
14.3
P10809_1106
9.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 17.8
Samples: 4
Max nTPM: 21.6
Min nTPM: 12.4
RHH5202_R3573
20.7
RHH5230_R3602
12.4
RHH5259_R3631
21.6
RHH5288_R3660
16.5
Effector memory CD8 T-cell nTPM: 14.8
Samples: 4
Max nTPM: 19.4
Min nTPM: 11.4
RHH5203_R3574
15.6
RHH5231_R3603
19.4
RHH5260_R3632
11.4
RHH5289_R3661
12.9
MAIT T-cell nTPM: 15.5
Samples: 4
Max nTPM: 20.0
Min nTPM: 12.9
RHH5233_R3605
12.9
RHH5205_R3576
15.1
RHH5262_R3634
13.8
RHH5297_R3663
20.0
Memory CD4 T-cell TFH nTPM: 17.1
Samples: 4
Max nTPM: 25.1
Min nTPM: 12.5
RHH5300_R3666
14.3
RHH5236_R3608
16.6
RHH5265_R3637
25.1
RHH5208_R3579
12.5
Memory CD4 T-cell Th1 nTPM: 13.4
Samples: 4
Max nTPM: 15.3
Min nTPM: 10.6
RHH5210_R3581
10.6
RHH5302_R3668
15.3
RHH5238_R3610
12.8
RHH5267_R3639
14.8
Memory CD4 T-cell Th1/Th17 nTPM: 18.9
Samples: 4
Max nTPM: 28.0
Min nTPM: 13.5
RHH5303_R3669
14.1
RHH5211_R3582
20.1
RHH5239_R3611
28.0
RHH5268_R3640
13.5
Memory CD4 T-cell Th17 nTPM: 11.2
Samples: 4
Max nTPM: 16.9
Min nTPM: 6.3
RHH5304_R3670
13.2
RHH5212_R3583
6.3
RHH5240_R3612
16.9
RHH5269_R3641
8.4
Memory CD4 T-cell Th2 nTPM: 20.0
Samples: 4
Max nTPM: 27.8
Min nTPM: 14.7
RHH5305_R3671
20.5
RHH5213_R3584
17.1
RHH5241_R3613
27.8
RHH5270_R3642
14.7
Naive CD4 T-cell nTPM: 22.0
Samples: 4
Max nTPM: 29.0
Min nTPM: 18.9
RHH5306_R3672
19.8
RHH5214_R3585
18.9
RHH5242_R3614
20.3
RHH5271_R3643
29.0
Naive CD8 T-cell nTPM: 22.4
Samples: 4
Max nTPM: 34.3
Min nTPM: 16.3
RHH5201_R3572
16.7
RHH5229_R3601
16.3
RHH5258_R3630
34.3
RHH5287_R3659
22.1
Non-Vd2 gdTCR nTPM: 15.4
Samples: 4
Max nTPM: 20.0
Min nTPM: 10.9
RHH5235_R3607
13.6
RHH5264_R3636
16.9
RHH5207_R3578
10.9
RHH5299_R3665
20.0
T-reg nTPM: 21.9
Samples: 4
Max nTPM: 32.0
Min nTPM: 9.7
RHH5301_R3667
15.1
RHH5237_R3609
32.0
RHH5266_R3638
9.7
RHH5209_R3580
30.9
Terminal effector memory CD4 T-cell nTPM: 21.8
Samples: 2
Max nTPM: 21.9
Min nTPM: 21.6
RHH5243_R3615
21.9
RHH5272_R3644
21.6
Terminal effector memory CD8 T-cell nTPM: 8.7
Samples: 4
Max nTPM: 12.7
Min nTPM: 7.1
RHH5232_R3604
7.5
RHH5204_R3575
7.5
RHH5261_R3633
7.1
RHH5296_R3662
12.7
Vd2 gdTCR nTPM: 13.6
Samples: 4
Max nTPM: 20.2
Min nTPM: 6.6
RHH5234_R3606
13.7
RHH5206_R3577
6.6
RHH5263_R3635
20.2
RHH5298_R3664
14.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
