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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
High
Inner nuclear layer:
High
Inner plexiform layer:
High
Limiting membrane:
High
Nerve fiber layer:
High
Outer plexiform layer:
High
Photoreceptor cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
93.4
nTPM
GTEx:
93.4
nTPM
FANTOM5:
104.3
Scaled Tags Per Million
Pig:
168.3
nTPM
Mouse:
612.4
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA036292
Photoreceptor cells
High
Immunohistochemical staining of human retina shows strong cytoplasmic and nuclear positivity in all layers.
100 ฮผm
Limiting membrane
High
Outer plexiform layer
High
Inner nuclear layer
High
Inner plexiform layer
High
Ganglion cells
High
Nerve fiber layer
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
93.4
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 93.4
Samples: 105
Max nTPM: 137.0
Min nTPM: 53.8
Std nTPM: 15.8
Median nTPM:
35_1
74 years, female
137.0
375_1
74 years, female
130.3
316_1
62 years, male
125.2
415_1
77 years, female
121.6
490_1
67 years, female
120.3
81_1
67 years, male
118.7
6_1
73 years, female
118.3
126_1
63 years, male
116.5
217_1
76 years, male
116.4
389_1
86 years, female
114.6
229_1
69 years, female
114.4
237_1
82 years, male
114.0
162_1
79 years, female
111.7
386_1
76 years, male
111.2
324_1
76 years, male
110.6
246_1
77 years, male
110.1
322_1
76 years, male
109.1
405_1
91 years, male
108.2
466_1
57 years, female
107.9
518_1
75 years, female
107.8
117_1
61 years, male
107.2
266_1
85 years, male
107.2
414_1
84 years, female
105.6
153_1
70 years, female
104.6
218_1
71 years, female
104.5
43_1
64 years, female
104.0
425_1
59 years, female
103.9
377_1
82 years, female
103.8
447_1
81 years, male
103.6
142_1
61 years, female
102.5
379_1
60 years, male
102.1
243_1
75 years, male
102.0
347_1
72 years, male
101.0
17_1
71 years, male
100.9
491_1
89 years, female
100.9
32_1
67 years, male
100.3
9_1
66 years, female
98.8
468_1
89 years, male
98.6
321_1
62 years, female
97.6
307_1
66 years, female
96.9
265_1
87 years, male
96.8
355_1
70 years, female
96.5
18_1
88 years, male
95.7
384_1
83 years, male
95.4
352_1
62 years, male
95.0
499_1
55 years, female
94.5
526_1
61 years, male
94.2
404_1
82 years, female
94.1
480_1
63 years, male
93.4
495_1
57 years, female
93.2
376_1
75 years, female
93.0
145_1
84 years, male
92.7
319_1
81 years, male
92.6
313_1
79 years, female
92.2
119_1
70 years, female
92.0
396_1
62 years, male
92.0
99_1
64 years, male
91.5
320_1
89 years, female
91.3
335_1
73 years, female
91.3
311_1
78 years, male
91.1
286_1
68 years, female
90.8
42_1
85 years, male
90.4
350_1
84 years, female
90.1
413_1
59 years, female
89.9
292_1
71 years, male
89.6
354_1
81 years, female
89.6
406_1
79 years, male
89.1
137_1
83 years, male
88.6
139_1
64 years, female
88.4
115_1
83 years, male
88.1
172_1
72 years, female
87.7
189_1
76 years, male
87.0
2_1
77 years, female
86.7
348_1
84 years, male
86.5
394_1
75 years, female
85.9
120_1
70 years, female
85.5
318_1
68 years, male
85.2
293_1
68 years, female
85.1
149_1
88 years, male
84.3
315_1
62 years, female
83.7
173_1
67 years, male
83.3
254_1
77 years, female
81.8
517_1
88 years, male
81.5
251_1
78 years, male
80.7
163_1
78 years, male
80.5
349_1
83 years, male
80.5
353_1
82 years, female
79.1
4_1
88 years, female
78.5
503_1
68 years, male
76.9
109_1
81 years, female
76.2
177_1
74 years, male
76.1
89_1
63 years, male
75.9
501_1
88 years, male
74.8
288_1
66 years, female
73.6
356_1
87 years, female
73.0
291_1
76 years, male
72.0
41_1
94 years, female
70.5
314_1
67 years, male
67.2
506_1
65 years, male
66.7
264_1
73 years, female
66.3
317_1
60 years, male
64.6
351_1
91 years, male
62.4
452_1
88 years, female
60.5
295_1
61 years, female
58.7
308_1
70 years, female
53.8
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.