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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
210.8
nTPM
HPA Brain:
236.6
nTPM
GTEx:
210.8
nTPM
FANTOM5:
191.6
Scaled Tags Per Million
Pig:
198.4
nTPM
Mouse:
167.7
nTPM
Allen mouse:
17.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA003894
Antibody HPA005437
Antibody CAB001945
Glial cells
High
High
High
Neuronal cells
Medium
High
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
236.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 206.9
2148
Female, age 91, left hemisphere
231.0
2621
Female, age 67, right hemisphere
225.2
1898
Male, age 80, left hemisphere
209.5
1911
Female, age 85, right hemisphere
205.7
1855
Male, age 76, left hemisphere
185.2
2529
Female, age 94, left hemisphere
184.8
Dentate gyrus nTPM: 210.3
2530
Female, age 94, left hemisphere
255.1
2010
Male, age 76, both hemispheres
226.2
2531
Female, age 67, both hemispheres
222.3
1927
Female, age 91, both hemispheres
189.8
2528
Male, age 74, both hemispheres
188.0
2246
Female, age 85, both hemispheres
180.5
Entorhinal gyrus nTPM: 231.8
2117
Female, age 91, right hemisphere
296.3
2764
Male, age 80, right hemisphere
255.2
2613
Female, age 94, left hemisphere
231.2
1787
Male, age 76, left hemisphere
208.9
1938
Female, age 85, left hemisphere
202.5
2686
Male, age 75, right hemisphere
196.6
Hippocampus, CA1 nTPM: 187.6
2749
Male, age 80, left hemisphere
212.9
1873
Female, age 85, both hemispheres
200.3
2082
Female, age 91, right hemisphere
180.8
2527
Male, age 74, both hemispheres
180.0
2045
Male, age 76, both hemispheres
164.0
Hippocampus, CA2 nTPM: 213.0
1963
Male, age 80, left hemisphere
254.9
1940
Female, age 85, left hemisphere
229.8
2437
Female, age 94, left hemisphere
220.8
2113
Female, age 91, right hemisphere
194.8
1892
Male, age 76, both hemispheres
189.2
2249
Male, age 74, both hemispheres
188.7
Hippocampus, CA3 nTPM: 186.6
1891
Female, age 85, both hemispheres
237.7
2620
Female, age 94, left hemisphere
217.8
1867
Male, age 76, both hemispheres
196.7
2861
Female, age 67, both hemispheres
173.2
2137
Male, age 80, left hemisphere
163.5
2436
Male, age 74, both hemispheres
130.9
Parahippocampal cortex nTPM: 200.8
1990
Female, age 91, right hemisphere
238.2
2250
Female, age 67, right hemisphere
230.0
2532
Female, age 72, left hemisphere
218.8
2692
Male, age 74, both hemispheres
213.2
2018
Male, age 76, both hemispheres
210.6
2245
Female, age 91, both hemispheres
195.8
1933
Female, age 85, both hemispheres
195.7
2693
Female, age 94, both hemispheres
188.2
1850
Male, age 80, both hemispheres
175.9
2622
Female, age 67, right hemisphere
141.4
Perirhinal gyrus nTPM: 175.4
2521
Female, age 94, right hemisphere
223.3
1847
Female, age 91, left hemisphere
181.3
1794
Male, age 80, right hemisphere
175.8
2848
Male, age 76, right hemisphere
152.7
1841
Female, age 85, right hemisphere
144.0
Subiculum nTPM: 236.6
2042
Male, age 76, both hemispheres
292.8
1901
Male, age 80, both hemispheres
265.7
1977
Female, age 85, both hemispheres
260.8
2619
Male, age 74, both hemispheres
203.0
2438
Female, age 94, left hemisphere
199.9
2729
Female, age 91, right hemisphere
197.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
210.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 210.8
Samples: 197
Max nTPM: 644.9
Min nTPM: 84.2
Std nTPM: 81.2
Median nTPM: 195.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
644.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
499.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
473.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
461.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
447.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
389.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
388.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
386.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
365.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
359.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
349.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
344.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
340.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
335.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
332.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
326.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
325.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
325.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
325.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
316.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
313.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
310.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
309.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
298.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
293.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
289.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
288.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
288.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
287.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
283.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
282.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
278.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
270.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
269.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
268.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
266.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
266.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
266.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
265.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
264.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
264.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
261.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
260.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
260.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
259.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
258.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
258.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
252.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
246.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
245.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
243.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
240.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
240.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
238.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
236.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
235.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
234.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
234.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
233.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
232.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
231.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
231.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
229.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
229.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
228.3
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
227.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
226.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
223.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
222.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
220.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
220.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
220.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
219.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
217.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
213.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
210.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
210.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
209.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
209.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
209.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
209.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
208.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
208.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
207.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
207.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
206.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
206.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
206.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
206.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
205.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
204.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
204.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
203.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
198.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
197.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
197.5
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
197.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
196.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
195.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
194.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
194.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
193.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
192.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
189.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
189.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
188.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
187.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
186.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
186.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
185.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
185.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
184.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
184.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
183.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
183.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
182.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
182.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
180.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
179.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
179.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
178.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
176.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
174.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
173.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
173.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
172.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
171.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
169.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
168.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
167.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
167.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
167.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
165.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
165.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
165.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
164.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
164.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
163.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
163.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
163.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
160.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
160.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
160.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
159.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
159.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
158.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
158.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
157.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
157.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
154.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
154.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
152.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
151.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
150.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
149.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
148.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
148.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
145.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
145.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
143.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
143.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
143.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
143.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
143.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
142.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
140.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
138.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
138.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
138.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
137.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
137.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
135.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
135.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
134.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
133.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
133.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
133.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
131.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
130.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
127.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
126.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
124.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
122.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
121.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
119.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
110.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
110.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
106.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
103.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
103.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
102.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
100.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
100.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
96.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
90.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
88.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
84.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
167.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 127.1
Samples: 4
Max nTPM: 139.4
Min nTPM: 110.2
Sample A
Male
139.4
Sample B
Male
130.7
Sample C
Female
128.1
Sample D
Female
110.2
Hippocampal formation nTPM: 167.7
Samples: 4
Max nTPM: 191.6
Min nTPM: 148.0
Sample A
Male
148.0
Sample B
Male
162.8
Sample C
Female
191.6
Sample D
Female
168.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.