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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:153.0 nTPM
HPA Brain:232.5 nTPM
GTEx:153.0 nTPM
FANTOM5:234.3 Scaled Tags Per Million
Pig:88.8 nTPM
Mouse:17.3 nTPM
Allen mouse:4.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.5
Sample id Sample description nTPM
Amygdala
nTPM: 226.1
2695 Female, age 67, right hemisphere 298.7
2814 Male, age 76, right hemisphere 287.8
2514 Male, age 75, right hemisphere 241.8
2517 Female, age 94, left hemisphere 179.8
1987 Female, age 91, left hemisphere 122.4
Basal amygdala
nTPM: 168.3
2827 Female, age 67, right hemisphere 263.5
2685 Female, age 94, left hemisphere 180.4
2110 Male, age 80, left hemisphere 174.7
2609 Male, age 75, right hemisphere 169.9
1955 Male, age 76, both hemispheres 136.9
2243 Female, age 91, right hemisphere 84.4
Central amygdala
nTPM: 210.9
2826 Female, age 94, left hemisphere 385.0
1905 Male, age 76, both hemispheres 206.2
2239 Male, age 80, left hemisphere 163.7
2701 Female, age 91, right hemisphere 158.5
2515 Male, age 75, right hemisphere 141.3
Corticomedial amygdala
nTPM: 126.2
2535 Female, age 67, right hemisphere 195.7
2428 Male, age 75, right hemisphere 159.1
2429 Female, age 94, left hemisphere 141.4
2240 Male, age 76, both hemispheres 132.0
2829 Male, age 80, left hemisphere 79.5
2242 Female, age 91, right hemisphere 49.5
Lateral amygdala
nTPM: 232.5
2830 Female, age 67, right hemisphere 314.4
2534 Female, age 94, left hemisphere 281.9
2516 Male, age 75, right hemisphere 245.5
1883 Male, age 76, both hemispheres 221.8
2256 Male, age 80, left hemisphere 212.2
2255 Female, age 91, right hemisphere 119.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 153.0
Samples: 181

Max nTPM: 480.2
Min nTPM: 8.6
Std nTPM: 96.6
Median nTPM: 121.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 480.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 427.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 404.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 402.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 396.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 382.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 382.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 369.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 363.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 361.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 347.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 343.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 342.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 341.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 336.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 316.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 312.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 303.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 291.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 287.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 282.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 277.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 270.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 269.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 263.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 258.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 255.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 255.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 253.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 252.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 251.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 250.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 248.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 237.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 226.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 226.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 225.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 220.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 219.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 217.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 217.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 217.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 216.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 214.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 213.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 210.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 207.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 206.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 201.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 195.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 192.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 190.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 189.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 189.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 188.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 184.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 178.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 177.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 176.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 175.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 174.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 172.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 171.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 171.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 168.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 166.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 166.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 161.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 160.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 159.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 154.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 150.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 149.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 146.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 144.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 139.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 139.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 139.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 138.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 137.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 135.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 131.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 128.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 128.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 127.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 127.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 125.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 124.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 123.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 123.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 121.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 118.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 117.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 116.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 116.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 116.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 115.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 114.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 113.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 112.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 111.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 106.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 106.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 104.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 103.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 103.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 100.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 99.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 99.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 99.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 98.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 97.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 97.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 97.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 96.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 95.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 94.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 93.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 93.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 92.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 92.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 91.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 88.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 87.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 87.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 87.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 86.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 86.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 86.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 85.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 84.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 83.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 83.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 83.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 83.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 83.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 82.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 81.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 80.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 80.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 79.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 79.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 77.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 76.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 76.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 76.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 74.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 73.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 73.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 72.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 68.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 67.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 65.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 64.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 64.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 62.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 61.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 61.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 60.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 59.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 59.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 58.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 58.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 54.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 53.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 53.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 53.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 52.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 51.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 50.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 49.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 49.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 45.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 42.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 40.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 39.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 38.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 33.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 32.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 28.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 8.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

234.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 234.3
FF:10151-102I7 76 years, female 234.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.8
Pig sample Sample description nTPM
Amygdala
nTPM: 88.8
Samples: 4

Max nTPM: 177.0
Min nTPM: 47.2
Sample A Female 54.6
Sample B Female 177.0
Sample C Male 76.2
Sample D Male 47.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 17.4
Samples: 4

Max nTPM: 27.2
Min nTPM: 13.2
Sample A Male 13.6
Sample B Male 13.2
Sample C Female 27.2
Sample D Female 15.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.3
69448632 Antisense, RP_050419_02_F04, Mouse strain C57BL/6J (56 days, male) 4.3

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