MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:207.1 nTPM
HPA Brain:432.5 nTPM
GTEx:207.1 nTPM
FANTOM5:360.2 Scaled Tags Per Million
Pig:481.6 nTPM
Mouse:161.9 nTPM
Allen mouse:3.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 432.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 248.6
2828 Female, age 72, unknown 403.8
2586 Male, age 75, left hemisphere 355.4
1827 Male, age 72, unknown 266.7
1833 Male, age 53, unknown 252.2
1870 Female, age 42, unknown 241.9
1830 Male, age 51, unknown 231.5
2411 Female, age 72, unknown 225.8
2219 Male, age 76, both hemispheres 174.0
2666 Male, age 74, left hemisphere 170.4
2019 Male, age 18, unknown 164.4
Dorsal raphe nucleus
nTPM: 372.0
2016 Female, age 72, unknown 485.3
2298 Female, age 72, unknown 455.7
2047 Male, age 72, unknown 342.4
1828 Male, age 53, unknown 321.3
2750 Male, age 76, both hemispheres 255.1
Inferior colliculus
nTPM: 277.5
1848 Female, age 42, unknown 339.7
2849 Male, age 72, unknown 303.2
2097 Female, age 72, unknown 291.1
1890 Male, age 53, unknown 176.0
Median raphe nucleus
nTPM: 241.9
2220 Male, age 76, midline 241.9
Periaquaductal grey, anterior
nTPM: 332.5
1795 Male, age 51, unknown 354.4
1947 Male, age 18, unknown 323.1
2502 Female, age 75, unknown 320.0
Periaquaductal grey, dorsal
nTPM: 392.3
2850 Male, age 76, both hemispheres 502.0
1840 Male, age 53, unknown 455.7
1831 Male, age 72, unknown 321.7
2464 Female, age 72, unknown 289.9
Periaquaductal grey, lateral
nTPM: 432.5
2272 Male, age 74, both hemispheres 448.0
2053 Male, age 18, unknown 439.5
2140 Male, age 76, both hemispheres 409.9
Pretectal area
nTPM: 292.4
2273 Male, age 74, both hemispheres 531.6
2825 Male, age 18, unknown 353.4
2224 Female, age 72, unknown 351.4
2667 Female, age 75, unknown 326.4
2407 Male, age 75, both hemispheres 273.7
1817 Female, age 42, unknown 267.8
1815 Male, age 53, unknown 266.1
2316 Male, age 76, right hemisphere 254.9
1944 Female, age 72, unknown 230.3
1816 Male, age 51, unknown 203.5
2007 Male, age 72, unknown 157.8
Red nucleus
nTPM: 285.7
1954 Female, age 42, unknown 347.2
2769 Male, age 72, unknown 327.8
1904 Male, age 53, unknown 325.7
1865 Male, age 51, unknown 321.5
2227 Male, age 72, unknown 319.7
2823 Male, age 76, right hemisphere 312.2
2503 Female, age 72, unknown 307.4
2725 Female, age 75, unknown 302.8
1821 Female, age 72, unknown 294.9
2588 Male, age 74, left hemisphere 210.3
2584 Male, age 75, left hemisphere 182.0
2785 Male, age 18, unknown 177.4
Substantia nigra
nTPM: 243.0
2699 Male, age 18, unknown 443.5
1916 Female, age 42, unknown 301.0
1851 Male, age 51, unknown 269.3
2590 Female, age 75, unknown 224.7
1889 Female, age 72, unknown 220.0
1941 Male, age 53, unknown 213.2
2409 Female, age 72, unknown 208.4
2583 Male, age 75, right hemisphere 207.2
2241 Male, age 72, unknown 179.7
2665 Male, age 74, both hemispheres 162.9
Superior colliculus
nTPM: 288.7
1995 Male, age 72, unknown 477.3
1796 Male, age 53, unknown 320.6
2664 Male, age 75, both hemispheres 306.3
1913 Female, age 42, unknown 305.5
2587 Male, age 74, left hemisphere 269.8
2261 Male, age 18, unknown 268.4
2087 Female, age 72, unknown 262.9
1839 Male, age 51, unknown 251.0
2668 Female, age 75, unknown 238.3
1895 Male, age 76, right hemisphere 186.8
Ventral tegmental area
nTPM: 275.6
2021 Male, age 53, unknown 322.3
1942 Male, age 51, unknown 304.9
1915 Female, age 42, unknown 285.4
2410 Female, age 72, unknown 259.5
2223 Female, age 72, unknown 241.2
2218 Male, age 76, both hemispheres 240.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 207.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 207.1
Samples: 183

Max nTPM: 824.5
Min nTPM: 18.6
Std nTPM: 143.0
Median nTPM: 173.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 824.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 752.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 726.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 657.4
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 609.9
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 586.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 565.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 536.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 530.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 484.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 475.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 360.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 360.2
FF:10158-103A5 76 years, female 360.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 481.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 348.4
Samples: 4

Max nTPM: 377.3
Min nTPM: 311.0
Sample A Female 360.0
Sample B Female 311.0
Sample C Male 377.3
Sample D Male 345.3
Midbrain
nTPM: 372.3
Samples: 4

Max nTPM: 618.7
Min nTPM: 201.9
Sample A Female 618.7
Sample B Female 317.4
Sample C Male 351.3
Sample D Male 201.9
Periaqueductal gray
nTPM: 481.6
Samples: 3

Max nTPM: 598.5
Min nTPM: 408.7
Sample B Female 437.7
Sample C Male 598.5
Sample D Male 408.7
Superior colliculi
nTPM: 271.6
Samples: 4

Max nTPM: 348.3
Min nTPM: 139.5
Sample A Female 286.2
Sample B Female 139.5
Sample C Male 348.3
Sample D Male 312.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 161.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 161.9
Samples: 4

Max nTPM: 181.9
Min nTPM: 141.7
Sample A Male 181.9
Sample B Male 141.7
Sample C Female 156.6
Sample D Female 167.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
88 Antisense, RP_040315_01_23, Mouse strain C57BL/6J (56 days, male) 3.7
87 Antisense, RP_040315_01_23, Mouse strain C57BL/6J (56 days, male) 2.6

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