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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA016970
Pigment epithelial cells
Not detected
Photoreceptor cells
Medium
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA074677
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1001.0
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 1001.0
Samples: 105
Max nTPM: 1918.6
Min nTPM: 415.2
Std nTPM: 291.2
Median nTPM:
316_1
62 years, male
1918.6
217_1
76 years, male
1736.7
480_1
63 years, male
1576.7
375_1
74 years, female
1566.1
405_1
91 years, male
1523.9
43_1
64 years, female
1421.8
466_1
57 years, female
1411.9
352_1
62 years, male
1405.7
386_1
76 years, male
1395.0
229_1
69 years, female
1390.2
319_1
81 years, male
1353.3
286_1
68 years, female
1350.9
526_1
61 years, male
1347.6
499_1
55 years, female
1317.0
142_1
61 years, female
1307.4
318_1
68 years, male
1305.4
447_1
81 years, male
1301.2
6_1
73 years, female
1292.9
35_1
74 years, female
1288.5
415_1
77 years, female
1252.7
324_1
76 years, male
1251.7
396_1
62 years, male
1246.2
218_1
71 years, female
1240.8
322_1
76 years, male
1230.8
355_1
70 years, female
1230.2
237_1
82 years, male
1223.5
518_1
75 years, female
1218.7
389_1
86 years, female
1214.2
404_1
82 years, female
1207.8
376_1
75 years, female
1205.5
246_1
77 years, male
1192.8
320_1
89 years, female
1187.9
172_1
72 years, female
1173.3
379_1
60 years, male
1133.5
81_1
67 years, male
1132.4
348_1
84 years, male
1130.4
153_1
70 years, female
1129.8
354_1
81 years, female
1114.4
347_1
72 years, male
1107.9
265_1
87 years, male
1107.4
425_1
59 years, female
1100.0
468_1
89 years, male
1092.0
32_1
67 years, male
1089.4
149_1
88 years, male
1078.1
291_1
76 years, male
1063.6
126_1
63 years, male
1041.7
266_1
85 years, male
1036.1
377_1
82 years, female
1035.3
292_1
71 years, male
1013.3
321_1
62 years, female
1008.8
251_1
78 years, male
996.9
406_1
79 years, male
994.2
243_1
75 years, male
992.6
394_1
75 years, female
986.9
350_1
84 years, female
968.3
503_1
68 years, male
968.3
9_1
66 years, female
954.1
384_1
83 years, male
940.9
145_1
84 years, male
932.7
490_1
67 years, female
928.3
335_1
73 years, female
918.3
353_1
82 years, female
912.1
163_1
78 years, male
906.5
162_1
79 years, female
895.7
517_1
88 years, male
892.6
139_1
64 years, female
874.2
356_1
87 years, female
866.8
177_1
74 years, male
858.3
18_1
88 years, male
856.8
115_1
83 years, male
852.8
307_1
66 years, female
835.1
288_1
66 years, female
812.8
117_1
61 years, male
812.7
413_1
59 years, female
801.7
349_1
83 years, male
791.3
17_1
71 years, male
787.8
313_1
79 years, female
783.0
414_1
84 years, female
770.9
4_1
88 years, female
762.9
173_1
67 years, male
753.4
311_1
78 years, male
740.8
495_1
57 years, female
740.7
506_1
65 years, male
724.1
254_1
77 years, female
723.8
120_1
70 years, female
717.2
295_1
61 years, female
705.3
2_1
77 years, female
704.6
315_1
62 years, female
702.9
264_1
73 years, female
699.9
189_1
76 years, male
682.8
314_1
67 years, male
674.3
109_1
81 years, female
673.1
317_1
60 years, male
663.7
42_1
85 years, male
658.2
308_1
70 years, female
635.6
501_1
88 years, male
634.5
119_1
70 years, female
620.4
99_1
64 years, male
602.3
293_1
68 years, female
599.9
137_1
83 years, male
595.8
491_1
89 years, female
569.4
89_1
63 years, male
566.6
351_1
91 years, male
502.3
41_1
94 years, female
443.6
452_1
88 years, female
415.2
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.